RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 IPO7O95373 1038 aaKnown RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 EML2O95834 649 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 MT-CYBP00156 380 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 ITGB2P05107 769 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 AMD1P17707 334 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 NAP1L1P55209 391 aaKnown RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 DCDC1P59894 354 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 TEX44Q53QW1 395 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 ZNF648Q5T619 568 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 IYDQ6PHW0 289 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 WDR74Q6RFH5 385 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 MFSD7Q6UXD7 560 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 LRRTM4Q86VH4 590 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 ZC3H18Q86VM9 953 aaKnown RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 PLXDC1Q8IUK5 500 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 TRAPPC5Q8IUR0 188 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 CACNA2D3Q8IZS8 1091 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 GPR26Q8NDV2 337 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 OLFM3Q96PB7 478 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 TEFMQ96QE5 360 aaKnown RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 FSD1LQ9BXM9 530 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 EPB41L1Q9H4G0 881 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 BPIFA1Q9NP55 256 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 PRDM8Q9NQV8 689 aa17.31■□□□□ 0.36
COL7A1-206ENST00000466591 CNOT6Q9ULM6 557 aaKnown RBP17.31■□□□□ 0.36
COL7A1-206ENST00000466591 C3orf70A6NLC5 250 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-206ENST00000466591 B8ZZF3 427 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 F5H423 210 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-206ENST00000466591 KMOO15229 486 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 CDK14O94921 469 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 ZRANB2O95218 330 aaKnown RBP eCLIP17.3■□□□□ 0.36
COL7A1-206ENST00000466591 SFTPCP11686 197 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 CTNNA2P26232 953 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 EPHA4P54764 986 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 NFATC3Q12968 1075 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 SQSTM1Q13501 440 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 PPP2R5EQ16537 467 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-206ENST00000466591 FAM182AQ5T1J6 154 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 ANKS6Q68DC2 871 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 CEACAM20Q6UY09 585 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 SLC25A41Q8N5S1 370 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 HAUS1Q96CS2 278 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 CXorf40BQ96DE9 158 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 WDR24Q96S15 920 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 ZCCHC2Q9C0B9 1178 aaKnown RBP17.3■□□□□ 0.36
COL7A1-206ENST00000466591 SEMA4CQ9C0C4 833 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 OCIAD1Q9NX40 245 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 SAE1Q9UBE0 346 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-206ENST00000466591 FAM153AQ9UHL3 310 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 PCDHGA3Q9Y5H0 932 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 B3GALT1Q9Y5Z6 326 aa17.3■□□□□ 0.36
COL7A1-206ENST00000466591 B4E171 279 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 VEGFDO43915 354 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 RAD1O60671 282 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 RASSF9O75901 435 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 ZIC2O95409 532 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-206ENST00000466591 PTMAP06454 111 aaKnown RBP17.29■□□□□ 0.36
COL7A1-206ENST00000466591 IDSP22304 550 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 PTPN3P26045 913 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 TSPAN7P41732 249 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 HALP42357 657 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 FOXM1Q08050 763 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 SLC14A2Q15849 920 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 TFDP3Q5H9I0 405 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 ZDHHC20Q5W0Z9 365 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 XKR5Q6UX68 686 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 SPOCD1Q6ZMY3 1216 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 PID1Q7Z2X4 250 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 TMC3Q7Z5M5 1100 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 IPMKQ8NFU5 416 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 BLOC1S5Q8TDH9 187 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 RBM41Q96IZ5 413 aaKnown RBP17.29■□□□□ 0.36
COL7A1-206ENST00000466591 TEKT5Q96M29 485 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 TRIB3Q96RU7 358 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 CTRCQ99895 268 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 TBC1D10AQ9BXI6 508 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 RSPH14Q9UHP6 348 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 PKP3Q9Y446 797 aa17.29■□□□□ 0.36
COL7A1-206ENST00000466591 PCYT1BQ9Y5K3 369 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-206ENST00000466591 SMG1Q96Q15 3661 aaKnown RBP17.29■□□□□ 0.36
COL7A1-206ENST00000466591 SCN8AQ9UQD0 1980 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-206ENST00000466591 POLR1CO15160 346 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-206ENST00000466591 MTX2O75431 263 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 ZNF7P17097 686 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-206ENST00000466591 BPIP17213 487 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 TYRP1P17643 537 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 NFKB1P19838 968 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 UGT1A3P35503 534 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 CYLC1P35663 651 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-206ENST00000466591 CDKN2BP42772 138 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 CYP4F2P78329 520 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 PRKD1Q15139 912 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-206ENST00000466591 GLT6D1Q7Z4J2 308 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 ADGRG6Q86SQ4 1221 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 DAAM2Q86T65 1068 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 DTX1Q86Y01 620 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 RCOR2Q8IZ40 523 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 NKD1Q969G9 470 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms