RNA–Protein interactions for RNA: ENST00000463829.1

USP9X-204, Transcript of ubiquitin specific peptidase 9 X-linked, human

TSL 3

Gene USP9X, Length 666 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP9X-204	ENST00000463829	PADI1	Q9ULC6	663 aa		4.18	□□□□□ -1.74
USP9X-204	ENST00000463829	PADI3	Q9ULW8	664 aa		4.18	□□□□□ -1.74
USP9X-204	ENST00000463829	SNX8	Q9Y5X2	465 aa		4.18	□□□□□ -1.74
USP9X-204	ENST00000463829	PTPRC	P08575	1304 aa		4.18	□□□□□ -1.74
USP9X-204	ENST00000463829	HNRNPCL2	B2RXH8	293 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	AHCYL1	O43865	530 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	PPP1R3D	O95685	299 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	AFP	P02771	609 aa	Known RBP	4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	FGF3	P11487	239 aa	Predicted RBP	4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	GNL1	P36915	607 aa	Predicted RBP	4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	MMP14	P50281	582 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	CLDN20	P56880	219 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	RUSC1-AS1	Q66K80	236 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	ZNF324B	Q6AW86	544 aa	Predicted RBP	4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	PRSS57	Q6UWY2	283 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	ARMC9	Q7Z3E5	817 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	SATL1	Q86VE3	508 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	SFR1	Q86XK3	245 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	C1orf87	Q8N0U7	546 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	RASGEF1C	Q8N431	466 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	KCNH5	Q8NCM2	988 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	ACVR1C	Q8NER5	493 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	GSDMB	Q8TAX9	411 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	UTP15	Q8TED0	518 aa	Known RBP	4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	PIGT	Q969N2	578 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	CDCA5	Q96FF9	252 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	IGSF21	Q96ID5	467 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	OSGEPL1	Q9H4B0	414 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	PAG1	Q9NWQ8	432 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	TRMT1	Q9NXH9	659 aa	Known RBP	4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	ARHGEF38	Q9NXL2	777 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	KCNS2	Q9ULS6	477 aa		4.17	□□□□□ -1.74
USP9X-204	ENST00000463829	SAA2-SAA4	A0A096LPE2	208 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	OR2A25	A4D2G3	310 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	C4orf47	A7E2U8	309 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	ZNF587B	E7ETH6	402 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	CLGN	O14967	610 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	BEST1	O76090	585 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	CAMTA2	O94983	1202 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	STARD3NL	O95772	234 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	GH2	P01242	217 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	SELL	P14151	372 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	USP8	P40818	1118 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	EIF2D	P41214	584 aa	Known RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	NRIP1	P48552	1158 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	RRP1	P56182	461 aa	Known RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	KRTAP10-7	P60409	375 aa	Predicted RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	EEF1A1	P68104	462 aa	Known RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	SLC20A2	Q08357	652 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	ASIC2	Q16515	512 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	SYT16	Q17RD7	645 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	IZUMO4	Q1ZYL8	232 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	TMEM35A	Q53FP2	167 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	KRTCAP3	Q53RY4	240 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	CFAP58	Q5T655	872 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	EEF1A1P5	Q5VTE0	462 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	C9orf57	Q5W0N0	161 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	TPRG1	Q6ZUI0	275 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	MEPCE	Q7L2J0	689 aa	Known RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	MAP7D3	Q8IWC1	876 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	SLC38A9	Q8NBW4	561 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	SLC20A1	Q8WUM9	679 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	DACH2	Q96NX9	599 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	PCYT2	Q99447	389 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	MXD3	Q9BW11	206 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	C1QTNF4	Q9BXJ3	329 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	DDX31	Q9H8H2	851 aa	Known RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	GIMAP4	Q9NUV9	329 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	DNAJB4	Q9UDY4	337 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	RPS6KA6	Q9UK32	745 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	TMEM184B	Q9Y519	407 aa	Predicted RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	PCDHGB1	Q9Y5G3	927 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	CGNL1	Q0VF96	1302 aa		4.16	□□□□□ -1.74
USP9X-204	ENST00000463829	PRAG1	Q86YV5	1406 aa		4.15	□□□□□ -1.74
USP9X-204	ENST00000463829		A0A1W2PR77	199 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	PLSCR5	A0PG75	271 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	DENND3	A2RUS2	1198 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	TMEM8B	A6NDV4	472 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	PLPP2	O43688	288 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	ENTPD3	O75355	529 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	TUBB	P07437	444 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	TGFB3	P10600	412 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	MMP9	P14780	707 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	MYOD1	P15172	320 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	HRH2	P25021	359 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	SUOX	P51687	545 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	PNLIPRP2	P54317	469 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	SPOCK1	Q08629	439 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	ZNF234	Q14588	700 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	MVP	Q14764	893 aa	Known RBP	4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	TOMM20	Q15388	145 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	DLG2	Q15700	870 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	NTRK2	Q16620	822 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	MEP1A	Q16819	746 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	CAPRIN2	Q6IMN6	1127 aa	Known RBP	4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	GFRAL	Q6UXV0	394 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	UNQ6126/PRO20091	Q6UXV3	157 aa		4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.15	□□□□□ -1.75
USP9X-204	ENST00000463829	TMEM219	Q86XT9	240 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms