RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PLEKHG4BQ96PX9 1271 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 WDR24Q96S15 920 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 TBC1D10AQ9BXI6 508 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 GPR63Q9BZJ6 419 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 EPN3Q9H201 632 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 OR2AG1Q9H205 316 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 MAGEE1Q9HCI5 957 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 APMAPQ9HDC9 416 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 CTTNBP2NLQ9P2B4 639 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 UVRAGQ9P2Y5 699 aa13.12□□□□□ -0.31
HMGB3-204ENST00000448905 ANKRD36A6QL64 1941 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 UNC13CQ8NB66 2214 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 A0A087X0T9 212 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 A6NCN8 305 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 PDZK1P1A8MUH7 402 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 FADS2P1A8MWK0 482 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 KATNA1O75449 491 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 PROSCO94903 275 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 CDK14O94921 469 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 HLA-DQB2P05538 268 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 H2AFZP0C0S5 128 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 FAM228BP0C875 321 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 TYRP1P17643 537 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 IDSP22304 550 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 DLSTP36957 453 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 STAT5AP42229 794 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 FOXK1P85037 733 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 SRSF1Q07955 248 aaKnown RBP eCLIP13.11□□□□□ -0.31
HMGB3-204ENST00000448905 KLRB1Q12918 225 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 TMEM26Q6ZUK4 368 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 H2AFVQ71UI9 128 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 LRRTM4Q86VH4 590 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 ATCAYQ86WG3 371 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 TRAM1L1Q8N609 369 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.11□□□□□ -0.31
HMGB3-204ENST00000448905 CTNNBL1Q8WYA6 563 aaPredicted RBP13.11□□□□□ -0.31
HMGB3-204ENST00000448905 HDAC11Q96DB2 347 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 STAMBPL1Q96FJ0 436 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 TGM7Q96PF1 710 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 ANP32EQ9BTT0 268 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 PADI1Q9ULC6 663 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 CAPN11Q9UMQ6 739 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 LRP4O75096 1905 aa13.11□□□□□ -0.31
HMGB3-204ENST00000448905 PRR19A6NJB7 356 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 KCNK1O00180 336 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 KCNJ13O60928 360 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 DLGAP3O95886 979 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 RECKO95980 971 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 C9P02748 559 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 ZFXP17010 805 aaPredicted RBP13.1□□□□□ -0.31
HMGB3-204ENST00000448905 ZNF7P17097 686 aaPredicted RBP13.1□□□□□ -0.31
HMGB3-204ENST00000448905 HALP42357 657 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 TNNT3P45378 269 aaPredicted RBP13.1□□□□□ -0.31
HMGB3-204ENST00000448905 UBASH3AP57075 661 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 DCDC1P59894 354 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 UBE2IP63279 158 aaKnown RBP13.1□□□□□ -0.31
HMGB3-204ENST00000448905 GBE1Q04446 702 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 AP1B1Q10567 949 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 GTF2H3Q13889 308 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 IHHQ14623 411 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 PDK1Q15118 436 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 IGFBP7Q16270 282 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 KLHL35Q6PF15 583 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 TMC3Q7Z5M5 1100 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 ADGRG6Q86SQ4 1221 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 NT5DC3Q86UY8 548 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 BPHLQ86WA6 291 aaPredicted RBP13.1□□□□□ -0.31
HMGB3-204ENST00000448905 SEC14L1Q92503 715 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 GLYATL1Q969I3 302 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 CXorf40BQ96DE9 158 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 RNF157Q96PX1 679 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 OR6C1Q96RD1 312 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 BRD8Q9H0E9 1235 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 PDE7BQ9NP56 450 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 POT1Q9NUX5 634 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 DTLQ9NZJ0 730 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 ANKMY1Q9P2S6 941 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 HEY1Q9Y5J3 304 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 PCYT1BQ9Y5K3 369 aaPredicted RBP13.1□□□□□ -0.31
HMGB3-204ENST00000448905 BOD1L1Q8NFC6 3051 aa13.1□□□□□ -0.31
HMGB3-204ENST00000448905 PIPSLA2A3N6 862 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 CHUKO15111 745 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 NDUFA10O95299 355 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 KDELR1P24390 212 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 OAS2P29728 719 aaKnown RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 SLC19A1P41440 591 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 SEPHS1P49903 392 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 IFI35P80217 286 aaPredicted RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 CDK18Q07002 472 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 PPIDQ08752 370 aaKnown RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 SLC10A2Q12908 348 aaPredicted RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 ERV3-1Q14264 604 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 CACHD1Q5VU97 1274 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 ALS2CLQ60I27 953 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 TCTN3Q6NUS6 607 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 ABRAXAS1Q6UWZ7 409 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 WASH2PQ6VEQ5 465 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 BZW1Q7L1Q6 419 aaKnown RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 PPP1R3BQ86XI6 285 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 PQLC3Q8N755 202 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms