RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 STARD8Q92502 1023 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 NCSTNQ92542 709 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 SCRN2Q96FV2 425 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 CSPG4P5Q96PW8 444 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 SLC38A3Q99624 504 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 NT5MQ9NPB1 228 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 DTLQ9NZJ0 730 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 CNOT6Q9ULM6 557 aaKnown RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 TP53TG5Q9Y2B4 290 aa12.78□□□□□ -0.36
LINC00339-202ENST00000416769 ZNF106Q9H2Y7 1883 aaKnown RBP12.78□□□□□ -0.36
LINC00339-202ENST00000416769 A6NCN8 305 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 FADS2P1A8MWK0 482 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 MIF4GDA9UHW6 222 aaKnown RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 FZD6O60353 706 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 SNX2O60749 519 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 DLGAP3O95886 979 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 PDGFAP04085 211 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 CD48P09326 243 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 RARAP10276 462 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 CTNNA2P26232 953 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 TEAD1P28347 426 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 MMP13P45452 471 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 UQCRFS1P47985 274 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 MLLT10P55197 1068 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 SH3BP2P78314 561 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 HHEXQ03014 270 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 DPTQ07507 201 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF569Q5MCW4 686 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 ARMC12Q5T9G4 340 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 MEI1Q5TIA1 1274 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 CHST15Q7LFX5 561 aaPredicted RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 GALNT13Q8IUC8 556 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 C17orf53Q8N3J3 647 aaPredicted RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 AHCYL2Q96HN2 611 aaKnown RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 COX14Q96I36 57 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF599Q96NL3 588 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 BRD8Q9H0E9 1235 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 GOLPH3Q9H4A6 298 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 SIDT1Q9NXL6 827 aaKnown RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 DDX56Q9NY93 547 aaKnown RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 OGFRQ9NZT2 677 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 SCHIP1Q9P0W5 487 aaPredicted RBP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 CHKBQ9Y259 395 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.77□□□□□ -0.37
LINC00339-202ENST00000416769 HYOU1Q9Y4L1 999 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 PCDHA3Q9Y5H8 950 aa12.77□□□□□ -0.37
LINC00339-202ENST00000416769 MED13Q9UHV7 2174 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 CCDC66A2RUB6 948 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 BLACEA4D250 179 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PRR19A6NJB7 356 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 H3BRJ5 948 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PSMD11O00231 422 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PSTPIP1O43586 416 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 MFSD11O43934 449 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 CLDN7O95471 211 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 ASMTLO95671 621 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PRLP01236 227 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 TUBB4AP04350 444 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 RNF224P0DH78 156 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 GP1BBP13224 206 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 CTNNA1P35221 906 aaKnown RBP12.76□□□□□ -0.37
LINC00339-202ENST00000416769 HCAR3P49019 387 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 STC1P52823 247 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 NIPAL4Q0D2K0 466 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 DPYSL2Q16555 572 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 ATP13A4Q4VNC1 1196 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 TMCO3Q6UWJ1 677 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 USP45Q70EL2 814 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 SLC35F6Q8N357 371 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 ATPAF2Q8N5M1 289 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 SPDYE1Q8NFV5 336 aaPredicted RBP12.76□□□□□ -0.37
LINC00339-202ENST00000416769 OR10G6Q8NH81 332 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 FAM71BQ8TC56 605 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 HES6Q96HZ4 224 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 ELMO2Q96JJ3 720 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 RUFY1Q96T51 708 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 ASPSCR1Q9BZE9 553 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PCDH18Q9HCL0 1135 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PRDM8Q9NQV8 689 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 ZNHIT2Q9UHR6 403 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 TUBD1Q9UJT1 453 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 PPIL1Q9Y3C6 166 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 JRKLQ9Y4A0 524 aa12.76□□□□□ -0.37
LINC00339-202ENST00000416769 A0A0J9YYE9 177 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 DNAJB5O75953 348 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 FTCDO95954 541 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 TRBC1P01850 177 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 STAT5AP42229 794 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 LEPRP48357 1165 aaKnown RBP12.75□□□□□ -0.37
LINC00339-202ENST00000416769 ZNF135P52742 658 aaPredicted RBP12.75□□□□□ -0.37
LINC00339-202ENST00000416769 RAB15P59190 212 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 GNG11P61952 73 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 GPLD1P80108 840 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 ITKQ08881 620 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 PDK2Q15119 407 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 PLA2G4EQ3MJ16 856 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 IYDQ6PHW0 289 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 KDELC2Q7Z4H8 507 aa12.75□□□□□ -0.37
LINC00339-202ENST00000416769 MAP7D3Q8IWC1 876 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms