RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 PDXPQ96GD0 296 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 OXNAD1Q96HP4 312 aaPredicted RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 LINC00615Q96LM1 132 aaPredicted RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 SLC46A1Q96NT5 459 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 RANBP9Q96S59 729 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 TBL1YQ9BQ87 522 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 FAM117AQ9C073 453 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 TCEAL2Q9H3H9 227 aaPredicted RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 GOLPH3Q9H4A6 298 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 EIF2B3Q9NR50 452 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 SPATS2LQ9NUQ6 558 aaKnown RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 ATXN10Q9UBB4 475 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 RNF14Q9UBS8 474 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 ZMIZ1Q9ULJ6 1067 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 PNMA8BQ9ULN7 279 aaPredicted RBP6.32□□□□□ -1.4
USP54-202ENST00000413442 TFR2Q9UP52 801 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SHOC2Q9UQ13 582 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 PPP2R2CQ9Y2T4 447 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 SLC30A1Q9Y6M5 507 aa6.32□□□□□ -1.4
USP54-202ENST00000413442 GOLGA4Q13439 2230 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 UNC13CQ8NB66 2214 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ZNF106Q9H2Y7 1883 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 HEATR9A2RTY3 570 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 MGAT4DA6NG13 374 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 LILRA5A6NI73 299 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 SRRM3A6NNA2 597 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 FADS2P1A8MWK0 482 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 E7EVH7 732 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 SMAPO00193 183 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 NDC80O14777 642 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 KPNA5O15131 536 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 INPP4BO15327 924 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 KDM1AO60341 852 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 USP12O75317 370 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CSO75390 466 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 SRP72O76094 671 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 AP2A2O94973 939 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ECEL1O95672 775 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 FTCDO95954 541 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 AGTP01019 485 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ITGA2BP08514 1039 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 MSH3P20585 1137 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ITGALP20701 1170 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 EIF2S3P41091 472 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 CD151P48509 253 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 INHBCP55103 352 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CCZ1BP86790 482 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CCZ1P86791 482 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 CYP4F3Q08477 520 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ILF2Q12905 390 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 RPA4Q13156 261 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 MSLNQ13421 630 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 ITIH4Q14624 930 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TBC1D25Q3MII6 688 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 BROXQ5VW32 411 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TMEM71Q6P5X7 295 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 KDM7AQ6ZMT4 941 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CHST15Q7LFX5 561 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 KDELC2Q7Z4H8 507 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 SPRED1Q7Z699 444 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ADGRG6Q86SQ4 1221 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CLEC14AQ86T13 490 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 AMZ2Q86W34 360 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 PLXDC1Q8IUK5 500 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 LMNTD2Q8IXW0 634 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 NAGSQ8N159 534 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 RASGEF1CQ8N431 466 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP54-202ENST00000413442 CCDC89Q8N998 374 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 FAM71DQ8N9W8 422 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 GABPB2Q8TAK5 448 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 GDAP1Q8TB36 358 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 BLOC1S5Q8TDH9 187 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 GRK7Q8WTQ7 553 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP54-202ENST00000413442 DCUN1D1Q96GG9 259 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 AHCYL2Q96HN2 611 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 RUNDC3BQ96NL0 473 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TEFMQ96QE5 360 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 AGAP2Q99490 1192 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 SLC38A3Q99624 504 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 DESI2Q9BSY9 194 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TMEM121Q9BTD3 319 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TSSK1BQ9BXA7 367 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TLR10Q9BXR5 811 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ASPSCR1Q9BZE9 553 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ASB8Q9H765 288 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 LZTFL1Q9NQ48 299 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 MRPL40Q9NQ50 206 aaKnown RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 POT1Q9NUX5 634 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 NLE1Q9NVX2 485 aaPredicted RBP6.31□□□□□ -1.4
USP54-202ENST00000413442 UBP1Q9NZI7 540 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 EPHA6Q9UF33 1036 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CD84Q9UIB8 345 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 TMEM98Q9Y2Y6 226 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 ENTPD2Q9Y5L3 495 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 HEBP2Q9Y5Z4 205 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 MRFAP1Q9Y605 127 aa6.31□□□□□ -1.4
USP54-202ENST00000413442 CAPN6Q9Y6Q1 641 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms