RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 TUBB3Q13509 450 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 SEPT7Q16181 437 aaKnown RBP16.43■□□□□ 0.22
CHMP3-203ENST00000409225 TCP11X2Q5H9J9 407 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 MARC1Q5VT66 337 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 SLC6A19Q695T7 634 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 PWWP2BQ6NUJ5 590 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 IRGCQ6NXR0 463 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 SYVN1Q86TM6 617 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 MCOLN2Q8IZK6 566 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 ATPAF2Q8N5M1 289 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.43■□□□□ 0.22
CHMP3-203ENST00000409225 KLHL6Q8WZ60 621 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 C19orf60Q96EN9 201 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 C5orf34Q96MH7 638 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 WDR24Q96S15 920 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 GPR87Q9BY21 358 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 ARFGAP3Q9NP61 516 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 RARRES3Q9UL19 164 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 SIK3Q9Y2K2 1263 aa16.43■□□□□ 0.22
CHMP3-203ENST00000409225 FADS2P1A8MWK0 482 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 PRPSAP2O60256 369 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 NUAK1O60285 661 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 NELFEP18615 380 aaKnown RBP16.42■□□□□ 0.22
CHMP3-203ENST00000409225 VARSP26640 1264 aaKnown RBP16.42■□□□□ 0.22
CHMP3-203ENST00000409225 SLC19A1P41440 591 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 CAPZBP47756 277 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 HCAR3P49019 387 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 RIPPLY3P57055 190 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 ITKQ08881 620 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 KCNAB1Q14722 419 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 PLA2G4EQ3MJ16 856 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 ZNF648Q5T619 568 aaPredicted RBP16.42■□□□□ 0.22
CHMP3-203ENST00000409225 CYB5D1Q6P9G0 228 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 CYP4V2Q6ZWL3 525 aaPredicted RBP16.42■□□□□ 0.22
CHMP3-203ENST00000409225 ZDHHC12Q96GR4 267 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 AGPAT1Q99943 283 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 CARD9Q9H257 536 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 ZNF624Q9P2J8 865 aaPredicted RBP16.42■□□□□ 0.22
CHMP3-203ENST00000409225 ATXN10Q9UBB4 475 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 SLC5A6Q9Y289 635 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 PCDHGB7Q9Y5F8 929 aa16.42■□□□□ 0.22
CHMP3-203ENST00000409225 PDZK1P1A8MUH7 402 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 ATMINO43313 823 aaPredicted RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 KRT38O76015 456 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 FOLR1P15328 257 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 ZNF8P17098 575 aaPredicted RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 AMPD1P23109 780 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 MIPP30301 263 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 MAMLD1Q13495 774 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 DPCR1Q3MIW9 517 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 TDRD12Q587J7 1177 aaKnown RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 HENMT1Q5T8I9 393 aaKnown RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 ACAD10Q6JQN1 1059 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 CRTC3Q6UUV7 619 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 TMCO3Q6UWJ1 677 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 RHOT1Q8IXI2 618 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 AOPEPQ8N6M6 819 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 RBMXL3Q8N7X1 1067 aaKnown RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 SIDT2Q8NBJ9 832 aaKnown RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 FDCSPQ8NFU4 85 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 PNPLA2Q96AD5 504 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 NUDT9Q9BW91 350 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 OR2AG1Q9H205 316 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 ZWILCHQ9H900 591 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 DNPEPQ9ULA0 475 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 G3BP2Q9UN86 482 aaKnown RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 CHKBQ9Y259 395 aa16.41■□□□□ 0.22
CHMP3-203ENST00000409225 FARSAQ9Y285 508 aaKnown RBP16.41■□□□□ 0.22
CHMP3-203ENST00000409225 A6NL46 340 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 H3BRJ5 948 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 ZNF185O15231 689 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 CEACAM4O75871 244 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 RNF8O76064 485 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 MTA2O94776 668 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 EEF1GP26641 437 aaKnown RBP16.4■□□□□ 0.22
CHMP3-203ENST00000409225 CLCNKAP51800 687 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 ZNF135P52742 658 aaPredicted RBP16.4■□□□□ 0.22
CHMP3-203ENST00000409225 CDH6P55285 790 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 PPP1CAP62136 330 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 LAMB3Q13751 1172 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 INSCQ1MX18 579 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 TTC13Q8NBP0 860 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 MR1Q95460 341 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 TRIM7Q9C029 511 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 FAM83DQ9H4H8 585 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 TAS2R14Q9NYV8 317 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 SLC23A2Q9UGH3 650 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 DNAJC16Q9Y2G8 782 aa16.4■□□□□ 0.22
CHMP3-203ENST00000409225 IGHV5-51A0A0C4DH38 117 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 CBX6O95503 412 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 EBLN1P0CF75 366 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 LPOP22079 712 aaPredicted RBP16.39■□□□□ 0.21
CHMP3-203ENST00000409225 SPINT3P49223 89 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 PDE1BQ01064 536 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 GPR18Q14330 331 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 PSTKQ8IV42 348 aaKnown RBP16.39■□□□□ 0.21
CHMP3-203ENST00000409225 LPCAT1Q8NF37 534 aa16.39■□□□□ 0.21
CHMP3-203ENST00000409225 SNRNP40Q96DI7 357 aaKnown RBP16.39■□□□□ 0.21
CHMP3-203ENST00000409225 PCMTD1Q96MG8 357 aaPredicted RBP16.39■□□□□ 0.21
CHMP3-203ENST00000409225 POT1Q9NUX5 634 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms