RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MIR1-1HGQ9H1L0 117 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 CENPHQ9H3R5 247 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 RHOJQ9H4E5 214 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 AASDHPPTQ9NRN7 309 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 ZNF446Q9NWS9 450 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 ZNF180Q9UJW8 692 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 CNOT6Q9ULM6 557 aaKnown RBP17.89■□□□□ 0.45
SDC1-203ENST00000403076 HS3ST3A1Q9Y663 406 aa17.89■□□□□ 0.45
SDC1-203ENST00000403076 ZNF106Q9H2Y7 1883 aaKnown RBP17.89■□□□□ 0.45
SDC1-203ENST00000403076 POM121BA6NF01 834 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 GOLGA6L10A6NI86 522 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 CACNB4O00305 520 aaPredicted RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 PRMT5O14744 637 aaPredicted RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 CDH16O75309 829 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 KRT37O76014 449 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 MAOBP27338 520 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 GCAP28676 217 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TRIM23P36406 574 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 NSG1P42857 185 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TMED2Q15363 201 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 ZNF528Q3MIS6 628 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 WDR45BQ5MNZ6 344 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 DOK6Q6PKX4 331 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 ZC3HC1Q86WB0 502 aaKnown RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 GPATCH11Q8N954 259 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 LPGAT1Q92604 370 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 VPS39Q96JC1 886 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 BOCQ9BWV1 1114 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TEX101Q9BY14 249 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 ZCCHC2Q9C0B9 1178 aaKnown RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 DUSP15Q9H1R2 295 aaPredicted RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 ZSCAN32Q9NX65 697 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 IQANK1A0A1B0GTG1 560 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 MAP2K7O14733 419 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 SAT1P21673 171 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 DHPSP49366 369 aaPredicted RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 LIMK2P53671 638 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TMEM115Q12893 351 aaPredicted RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 ILF2Q12905 390 aaKnown RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 GTF2H3Q13889 308 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 MROH9Q5TGP6 573 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 PTRHD1Q6GMV3 140 aaKnown RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 DET1Q7L5Y6 550 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TDRPQ86YL5 185 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 RIBC1Q8N443 379 aaPredicted RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 FUBP1Q96AE4 644 aaKnown RBP17.88■□□□□ 0.45
SDC1-203ENST00000403076 BMFQ96LC9 184 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 DHRS4Q9BTZ2 278 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 LGR4Q9BXB1 951 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 OR2AG1Q9H205 316 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TRIM39Q9HCM9 518 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 CTNNAL1Q9UBT7 734 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 TMEM98Q9Y2Y6 226 aa17.88■□□□□ 0.45
SDC1-203ENST00000403076 ABCA7Q8IZY2 2146 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 FAM95CA0A1B0GW59 222 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 A6NNZ2 444 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 H0Y8X5 98 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 HRO43593 1189 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 SASH3O75995 380 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 CDK14O94921 469 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 ITGA2BP08514 1039 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 SNRPAP09012 282 aaKnown RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 MYZAPP0CAP1 466 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 MYCLP1P12525 358 aaPredicted RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 ATP1B2P14415 290 aaPredicted RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 PKMP14618 531 aaKnown RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 CNTFP26441 200 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 CNR2P34972 360 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 THOP1P52888 689 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 BMPR2Q13873 1038 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 KHDC1Q4VXA5 237 aaKnown RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 GCNT7Q6ZNI0 430 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 CLDN19Q8N6F1 224 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 GOLGA6L1Q8N7Z2 621 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 TMEM145Q8NBT3 493 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 COX14Q96I36 57 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 ELMO2Q96JJ3 720 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 C1QTNF1Q9BXJ1 281 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 GNPTGQ9UJJ9 305 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 SLC39A10Q9ULF5 831 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 CORO1CQ9ULV4 474 aaPredicted RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 MTO1Q9Y2Z2 717 aaKnown RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 PCDHB1Q9Y5F3 818 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 OAS3Q9Y6K5 1087 aaKnown RBP17.87■□□□□ 0.45
SDC1-203ENST00000403076 EML5Q05BV3 1969 aa17.87■□□□□ 0.45
SDC1-203ENST00000403076 PLXND1Q9Y4D7 1925 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 IGLV3-16A0A075B6K0 115 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 TRIM49D1C9J1S8 452 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 F8W8V4 182 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 RGS16O15492 202 aaPredicted RBP17.86■□□□□ 0.45
SDC1-203ENST00000403076 ATP8B1O43520 1251 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 GALR2O43603 387 aaPredicted RBP17.86■□□□□ 0.45
SDC1-203ENST00000403076 KRT15P19012 456 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 RPS3P23396 243 aaKnown RBP eCLIP17.86■□□□□ 0.455e-11■■■■□ 21
SDC1-203ENST00000403076 HTR1BP28222 390 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 SLC12A2P55011 1212 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 YPEL5P62699 121 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 B4GALNT1Q00973 533 aa17.86■□□□□ 0.45
SDC1-203ENST00000403076 PDE1CQ14123 709 aaPredicted RBP17.86■□□□□ 0.45
SDC1-203ENST00000403076 KYAT3Q6YP21 454 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms