RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TUBA8Q9NY65 449 aaPredicted RBP20.82■□□□□ 0.92
CTCF-202ENST00000401394 PKD2L2Q9NZM6 624 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 FBXO10Q9UK96 956 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 MIA3Q5JRA6 1907 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 NUP214P35658 2090 aaPredicted RBP20.82■□□□□ 0.92
CTCF-202ENST00000401394 A0A1W2PP18 115 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 CD3EAPO15446 510 aaKnown RBP20.82■□□□□ 0.92
CTCF-202ENST00000401394 INMTO95050 263 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 MIB1Q86YT6 1006 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 CCDC90BQ9GZT6 254 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 TOR3AQ9H497 397 aa20.82■□□□□ 0.92
CTCF-202ENST00000401394 MYL3P08590 195 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 ATXN1LP0C7T5 689 aaKnown RBP20.81■□□□□ 0.92
CTCF-202ENST00000401394 MANEALQ5VSG8 457 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 USP51Q70EK9 711 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 FIG4Q92562 907 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 CCDC97Q96F63 343 aaPredicted RBP20.81■□□□□ 0.92
CTCF-202ENST00000401394 SARS2Q9NP81 518 aaKnown RBP20.81■□□□□ 0.92
CTCF-202ENST00000401394 RNF112Q9ULX5 631 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 ARL5CA6NH57 179 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 CXCL11O14625 94 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 KATNA1O75449 491 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 OR4F21O95013 312 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 BCL10O95999 233 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 GRIK1P39086 918 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 HLCSP50747 726 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 DNASE1L3Q13609 305 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 MFSD10Q14728 455 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 SLC14A2Q15849 920 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 MARC1Q5VT66 337 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 KIAA0408Q6ZU52 694 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 FRS2Q8WU20 508 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 STON2Q8WXE9 905 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 IGSF8Q969P0 613 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 TSPAN17Q96FV3 270 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 SEMA3CQ99985 751 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 SLC25A51Q9H1U9 297 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 IKZF5Q9H5V7 419 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 GID8Q9NWU2 228 aa20.81■□□□□ 0.92
CTCF-202ENST00000401394 PTBP2Q9UKA9 531 aaKnown RBP20.81■□□□□ 0.92
CTCF-202ENST00000401394 OTOFQ9HC10 1997 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 TMEM247A6NEH6 219 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 XPNPEP2O43895 674 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 CAPN15O75808 1086 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 B3GALT4O96024 378 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 FDXRP22570 491 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 ARSFP54793 590 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 PHEXP78562 749 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 IFITM3Q01628 133 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 DDR2Q16832 855 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 CCNYL2Q5T2Q4 361 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 RTL3Q8N8U3 475 aaKnown RBP20.8■□□□□ 0.92
CTCF-202ENST00000401394 FNDC5Q8NAU1 212 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 TRIM15Q9C019 465 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 EIF2B4Q9UI10 523 aaKnown RBP20.8■□□□□ 0.92
CTCF-202ENST00000401394 MKI67P46013 3256 aaKnown RBP20.8■□□□□ 0.92
CTCF-202ENST00000401394 THP07101 528 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 MAGEA8P43361 318 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 RAD23AP54725 363 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 RBBP7Q16576 425 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 FBXO39Q8N4B4 442 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 PACRGLQ8N7B6 248 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 KLHDC9Q8NEP7 349 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 PROKR1Q8TCW9 393 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 AMBRA1Q9C0C7 1298 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 PCDHB3Q9Y5E6 796 aa20.8■□□□□ 0.92
CTCF-202ENST00000401394 MROH6A6NGR9 719 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 IGLV3-25P01717 112 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 C1QCP02747 245 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 HTR1BP28222 390 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 HALP42357 657 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 POLD2P49005 469 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 POLR2JP52435 117 aaKnown RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 BNIP2Q12982 314 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 TMCO5AQ8N6Q1 288 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 PRKD2Q9BZL6 878 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 CATSPERBQ9H7T0 1116 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 PAK1IP1Q9NWT1 392 aaPredicted RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.79■□□□□ 0.92
CTCF-202ENST00000401394 SMIM35A0A1B0GVV1 85 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 CFAP99D6REC4 459 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 AP3B1O00203 1094 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 BTN3A1O00481 513 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 SLC22A3O75751 556 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 LHX1P48742 406 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 HK3P52790 923 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 GSTM4Q03013 218 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 RCAN2Q14206 197 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 LAIR2Q6ISS4 152 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 NCCRP1Q6ZVX7 275 aaPredicted RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 TMEM179BQ7Z7N9 219 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 CFAP52Q8N1V2 620 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 ARRDC2Q8TBH0 407 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 CALML6Q8TD86 181 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 GFM2Q969S9 779 aaKnown RBP20.79■□□□□ 0.92
CTCF-202ENST00000401394 GPR21Q99679 349 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 SGIP1Q9BQI5 828 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 FUNDC2Q9BWH2 189 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 BPIFA1Q9NP55 256 aa20.79■□□□□ 0.92
CTCF-202ENST00000401394 PAIP2BQ9ULR5 123 aaKnown RBP20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms