RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NUAK2Q9H093 628 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 P2RY12Q9H244 342 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ANKZF1Q9H8Y5 726 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CNOT10Q9H9A5 744 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SLC6A13Q9NSD5 602 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 KIAA1456Q9P272 454 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 STEAP1Q9UHE8 339 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ITGA11Q9UKX5 1188 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRAF3IP3Q9Y228 551 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TNFSF13BQ9Y275 285 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 R3HDM2Q9Y2K5 976 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TMEM94Q12767 1356 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 IL16Q14005 1332 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 SMARCA2P51531 1590 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CYP3A7-CYP3A51PA0A087WV96 503 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 A0A0A6YYC8 382 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ELOVL7A1L3X0 281 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 EME2A4GXA9 379 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 C3orf70A6NLC5 250 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 I3L1I5 382 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 PPEF2O14830 753 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 EIF3DO15371 548 aaKnown RBP eCLIP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ST8SIA3O43173 380 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 GPRIN2O60269 458 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 HBP1O60381 514 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CYTIPO60759 359 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 PROP1O75360 226 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 SLITRK3O94933 977 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 TPM3P06753 285 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CCDC192P0DO97 292 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 FCER1AP12319 257 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 GLRA2P23416 452 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CYP3A7P24462 503 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ADORA2AP29274 412 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 GNAQP50148 359 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 METAP1P53582 386 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 YWHAZP63104 245 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 NHLH1Q02575 133 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 GCNT1Q02742 428 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 PIGFQ07326 219 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ACSM2AQ08AH3 577 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 OLIG2Q13516 323 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ALKBH1Q13686 389 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 KARSQ15046 597 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 SNAPC1Q16533 368 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CYP2A13Q16696 494 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ACSM2BQ68CK6 577 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 GRHL2Q6ISB3 625 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 RGS7BPQ6MZT1 257 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 GSTA5Q7RTV2 222 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 TRAPPC11Q7Z392 1133 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 HAUS6Q7Z4H7 955 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 P3H2Q8IVL5 708 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 HJURPQ8NCD3 748 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 AGBL3Q8NEM8 1001 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 TSPAN14Q8NG11 270 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 OR10S1Q8NGN2 331 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 OCC1Q8TAD7 63 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 AGR3Q8TD06 166 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 METTL21AQ8WXB1 218 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ARHGAP45Q92619 1136 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 SGCDQ92629 289 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 KAT2AQ92830 837 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ADAD1Q96M93 576 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 HS6ST2Q96MM7 605 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 INPP5KQ9BT40 448 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 TEX13AQ9BXU3 409 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 HDHD5Q9BXW7 423 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 PUS3Q9BZE2 481 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 RIBC2Q9H4K1 309 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 RANGRFQ9HD47 186 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ASAH2Q9NR71 780 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 HOMER3Q9NSC5 361 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 TMOD3Q9NYL9 352 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 VSX1Q9NZR4 365 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CNOT8Q9UFF9 292 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 FBXW11Q9UKB1 542 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 CCPG1Q9ULG6 757 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 EXO1Q9UQ84 846 aaKnown RBP4.11□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF148Q9UQR1 794 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 NAALAD2Q9Y3Q0 740 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 AATKQ6ZMQ8 1374 aa4.11□□□□□ -1.75
HMGB1-204ENST00000399489 LAMC3Q9Y6N6 1575 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 A0A1B0GWJ7 208 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 XKRY2A2RUG3 117 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 C5orf51A6NDU8 294 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 L7N2F9 121 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 SLC16A8O95907 504 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 BCL10O95999 233 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 FGBP02675 491 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 ALDOAP04075 364 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 TMEM225BP0DP42 221 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 RFC4P35249 363 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 TAGLN2P37802 199 aaKnown RBP4.1□□□□□ -1.75
HMGB1-204ENST00000399489 PTGER3P43115 390 aa4.1□□□□□ -1.75
HMGB1-204ENST00000399489 MTHFSP49914 203 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms