RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLC1A5Q15758 541 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CST6Q15828 149 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 LILRA6Q6PI73 481 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PARGQ86W56 976 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF761Q86XN6 746 aaPredicted RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CNTD1Q8N815 330 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 FIBINQ8TAL6 211 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 CADM1Q9BY67 442 aaKnown RBP10.24□□□□□ -0.77
COL6A3-205ENST00000392004 PLA2G2FQ9BZM2 168 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 TBC1D17Q9HA65 648 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 NCDNQ9UBB6 729 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF212Q9UDV6 495 aa10.24□□□□□ -0.77
COL6A3-205ENST00000392004 FAM86C2PA6NEL3 165 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 PRRT4C9JH25 899 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 TRAFD1O14545 582 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 FFAR3O14843 346 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 DCLK1O15075 740 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GPR42O15529 346 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SPAM1P38567 509 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SLC7A9P82251 487 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 CNTN1Q12860 1018 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ILF3Q12906 894 aaKnown RBP eCLIP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ADAM15Q13444 863 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 CAMK1Q14012 370 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 FUT11Q495W5 492 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 AGAP9Q5VTM2 703 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 HTR3DQ70Z44 454 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 METTL3Q86U44 580 aaKnown RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GALNT13Q8IUC8 556 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SFTPA1Q8IWL2 248 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 PRSS58Q8IYP2 241 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ST13P4Q8IZP2 240 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 TRMT2BQ96GJ1 504 aaKnown RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF184Q99676 751 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 FRMD8Q9BZ67 464 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 VPS9D1Q9Y2B5 631 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 MTO1Q9Y2Z2 717 aaKnown RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SPAG17Q6Q759 2223 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 MAGEB16A2A368 324 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 MAN2B1O00754 1011 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 TPP1O14773 563 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ZCCHC18P0CG32 403 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 STX1BP61266 288 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 WASHC5Q12768 1159 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 PRKAA1Q13131 559 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 MAP7Q14244 749 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 LRRC32Q14392 662 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 PRRT3Q5FWE3 981 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 N4BP2L1Q5TBK1 243 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 RGS9BPQ6ZS82 235 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 OLIG1Q8TAK6 271 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 C1orf74Q96LT6 269 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 FAM210AQ96ND0 272 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 WDR26Q9H7D7 661 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 MTMR10Q9NXD2 777 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF711Q9Y462 761 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 UPK3BL1B0FP48 263 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 UPK3BL2E5RIL1 263 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 H0Y858 1186 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GSC2O15499 205 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ZBTB14O43829 449 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ITPKAP23677 461 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GSTT1P30711 240 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ARCN1P48444 511 aaKnown RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 IL2P60568 153 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 USP4Q13107 963 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 C6orf10Q5SRN2 563 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SLC9A4Q6AI14 798 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 C12orf40Q86WS4 652 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 HIPK4Q8NE63 616 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF707Q96C28 371 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 CLIP3Q96DZ5 547 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GPR21Q99679 349 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 PRMT5O14744 637 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 NIPSNAP2O75323 286 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SPAG6O75602 509 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 TYRP1P17643 537 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 IVDP26440 423 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 HNF1BP35680 557 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GMPRP36959 345 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SERPINB9P50453 376 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 GSTA3Q16772 222 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 UGT3A1Q6NUS8 523 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 POTEHQ6S545 545 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ERN2Q76MJ5 926 aaKnown RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 PHYKPLQ8IUZ5 450 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 TSACCQ96A04 125 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 OLFM3Q96PB7 478 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 MANSC1Q9H8J5 431 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SEMA4BQ9NPR2 832 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-205ENST00000392004 NDE1Q9NXR1 346 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SPASTQ9UBP0 616 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 SLC24A2Q9UI40 661 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 EFR3BQ9Y2G0 817 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 CACNA1IQ9P0X4 2223 aa10.23□□□□□ -0.77
COL6A3-205ENST00000392004 ZNF8P17098 575 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-205ENST00000392004 TFEBP19484 476 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 IL4RP24394 825 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 CYP4F2P78329 520 aa10.22□□□□□ -0.77
COL6A3-205ENST00000392004 NCEH1Q6PIU2 408 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms