RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 SPATA17Q96L03 361 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 NSUN5Q96P11 429 aaKnown RBP13.76□□□□□ -0.21
SDC1-202ENST00000381150 KATNAL1Q9BW62 490 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 AP5M1Q9H0R1 490 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 EIF2B3Q9NR50 452 aaKnown RBP13.76□□□□□ -0.21
SDC1-202ENST00000381150 COMMD10Q9Y6G5 202 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 LAMA2P24043 3122 aaKnown RBP13.76□□□□□ -0.21
SDC1-202ENST00000381150 MYBPHLA2RUH7 354 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 GSTA4O15217 222 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 MAP2K4P45985 399 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 KPNA2P52292 529 aaKnown RBP13.76□□□□□ -0.21
SDC1-202ENST00000381150 MTPNP58546 118 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 DAOAP59103 153 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 NCS1P62166 190 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 BTBD8Q5XKL5 378 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 VASH1Q7L8A9 365 aaPredicted RBP13.76□□□□□ -0.21
SDC1-202ENST00000381150 THAP5Q7Z6K1 395 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 ZDHHC13Q8IUH4 622 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 NCLNQ969V3 563 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 ITPKCQ96DU7 683 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 MYRFLQ96LU7 910 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 SLC9A7Q96T83 725 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 SLC30A3Q99726 388 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 TOR3AQ9H497 397 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 ATP13A3Q9H7F0 1226 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 CD320Q9NPF0 282 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 PCDHGA8Q9Y5G5 932 aa13.76□□□□□ -0.21
SDC1-202ENST00000381150 UBFD1O14562 309 aaKnown RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 ACOX3O15254 700 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 THRBP10828 461 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 MAGEA12P43365 314 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 CLCNKBP51801 687 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 SELENBP1Q13228 472 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ANKRD13BQ86YJ7 626 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 SPARTQ8N0X7 666 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 PTGR2Q8N8N7 351 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 PPHLN1Q8NEY8 458 aaKnown RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 ANKRD49Q8WVL7 239 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 PCED1BQ96HM7 432 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ZFYVE19Q96K21 471 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ULBP1Q9BZM6 244 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 TP63Q9H3D4 680 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 FAM105AQ9NUU6 356 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 INTS7Q9NVH2 962 aaKnown RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 ST3GAL5Q9UNP4 418 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 PDE10AQ9Y233 779 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 INVSQ9Y283 1065 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 NUP205Q92621 2012 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 AQP12BA6NM10 295 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 TSPAN3O60637 253 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ABCB7O75027 752 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 KRT8P05787 483 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 TCF3P15923 654 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ALOX12P18054 663 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 MTHFRP42898 656 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 MRPS6P82932 125 aaKnown RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 NRG1Q02297 640 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 SCAPQ12770 1279 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ATAD3BQ5T9A4 648 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 GLYATQ6IB77 296 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 NEPROQ6NW34 567 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ARHGAP36Q6ZRI8 547 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 AQP12AQ8IXF9 295 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 BIRC7Q96CA5 298 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 PGAP3Q96FM1 320 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 DMRTB1Q96MA1 342 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 GAD1Q99259 594 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ACTR3BQ9P1U1 418 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 SUN2Q9UH99 717 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 BPTFQ12830 3046 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 OR51F1A6NGY5 319 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 FAM47E-STBD1D6RA91 191 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 NPHS1O60500 1241 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 CHRNA1P02708 482 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 MZF1P28698 734 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 HOXD11P31277 338 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 ARSFP54793 590 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 SIM2Q14190 667 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 PACRGLQ8N7B6 248 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ITFG1Q8TB96 612 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 CNIH3Q8TBE1 160 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 RORBQ92753 470 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 NTAN1Q96AB6 310 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 FEM1CQ96JP0 617 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 PAAF1Q9BRP4 392 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 CASS4Q9NQ75 786 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 HPS4Q9NQG7 708 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 TMEM9Q9P0T7 183 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 STAP1Q9ULZ2 295 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 ERVK-11Q9UQG0 969 aa13.75□□□□□ -0.21
SDC1-202ENST00000381150 TIMM13Q9Y5L4 95 aaPredicted RBP13.75□□□□□ -0.21
SDC1-202ENST00000381150 TTC24A2A3L6 582 aaPredicted RBP13.74□□□□□ -0.21
SDC1-202ENST00000381150 AXIN1O15169 862 aa13.74□□□□□ -0.21
SDC1-202ENST00000381150 FTH1P02794 183 aa13.74□□□□□ -0.21
SDC1-202ENST00000381150 CAPNS1P04632 268 aa13.74□□□□□ -0.21
SDC1-202ENST00000381150 UGT2B4P06133 528 aa13.74□□□□□ -0.21
SDC1-202ENST00000381150 FCGR1AP12314 374 aa13.74□□□□□ -0.21
SDC1-202ENST00000381150 GTF2E2P29084 291 aaKnown RBP13.74□□□□□ -0.21
SDC1-202ENST00000381150 CTGFP29279 349 aa13.74□□□□□ -0.21
SDC1-202ENST00000381150 FMO3P31513 532 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms