RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ANXA2P07355 339 aaKnown RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 AMPD1P23109 780 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 VAMP1P23763 118 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 CDC34P49427 236 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RBP5P82980 135 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PPIL2Q13356 520 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 ADGRF1Q5T601 910 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 DUPD1Q68J44 220 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 MILR1Q7Z6M3 343 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM17Q86X19 198 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 RALGPS2Q86X27 583 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 KIAA0319LQ8IZA0 1049 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SPATA22Q8NHS9 363 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 SLC30A5Q8TAD4 765 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 PIGBQ92521 554 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 C3orf30Q96M34 536 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 AIFM3Q96NN9 605 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 FAM83CQ9BQN1 747 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 FRMD8P1Q9BZ68 369 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-202ENST00000375405 STRADBQ9C0K7 418 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 REEP1Q9H902 201 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 GJB4Q9NTQ9 266 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 KLRF1Q9NZS2 232 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 MAU2Q9Y6X3 613 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 TRPM2O94759 1503 aa4.62□□□□□ -1.67
SCN1A-202ENST00000375405 NESP48681 1621 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RPTORQ8N122 1335 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RP1P56715 2156 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 MEIS2O14770 477 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 IGSF6O95976 241 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RHOP08100 348 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RBP1P09455 135 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 OR1E1P30953 314 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 GPD2P43304 727 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RPIAP49247 311 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF311Q5JNZ3 666 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 FBXO47Q5MNV8 452 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 NOTUMQ6P988 496 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 PAGE2Q7Z2X7 111 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 OR14C36Q8NHC7 312 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ACOT11Q8WXI4 607 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 DLG3Q92796 817 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 SAMD11Q96NU1 681 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RNF157Q96PX1 679 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 OR5B12Q96R08 314 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 SYT4Q9H2B2 425 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 TRPV5Q9NQA5 729 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 SNTG2Q9NY99 539 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 MRPS17Q9Y2R5 130 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 GMNCA6NCL1 334 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 PDE2AO00408 941 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 KHNYNO15037 678 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 UGDHO60701 494 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 IL18RAPO95256 599 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 LY86O95711 162 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 BMP4P12644 408 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 JUPP14923 745 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RBMS1P29558 406 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF200P98182 395 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 BCL2L1Q07817 233 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 POU4F3Q15319 338 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 CHI3L2Q15782 390 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 TUSC1Q2TAM9 212 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 KCTD21Q4G0X4 260 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 INO80DQ53TQ3 878 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 FAM26DQ5JW98 314 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 EMC10Q5UCC4 262 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 LCN1P1Q5VSP4 162 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ISLR2Q6UXK2 745 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF662Q6ZS27 426 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ERN2Q76MJ5 926 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 LINGO2Q7L985 606 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 DNAJB7Q7Z6W7 309 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 PHTF2Q8N3S3 785 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM199Q8N511 208 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RSPRY1Q96DX4 576 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 LPIN3Q9BQK8 851 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 MGME1Q9BQP7 344 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 OR51B6Q9H340 312 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 MMADHCQ9H3L0 296 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 CXorf56Q9H5V9 222 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 WDR26Q9H7D7 661 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 C3orf14Q9HBI5 128 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 TEX10Q9NXF1 929 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 EMC3Q9P0I2 261 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 CRNNQ9UBG3 495 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 HCN2Q9UL51 889 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 NSD2O96028 1365 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 MEIOCA2RUB1 952 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 PROCP04070 461 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 SERPINA7P05543 415 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 SRPRAP08240 638 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 SLC35G4P0C7Q5 338 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 RYKP34925 604 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 ACOT2P49753 483 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 AP3M2P53677 418 aa4.61□□□□□ -1.67
SCN1A-202ENST00000375405 DYNLL1P63167 89 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 FKBP3Q00688 224 aaKnown RBP4.61□□□□□ -1.67
SCN1A-202ENST00000375405 TLE4Q04727 773 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms