RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 PTPRJQ12913 1337 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 TCRBV7S2A1N4TA0A589 114 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 EOMESO95936 686 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CTPS1P17812 591 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TSPAN8P19075 237 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CTNNB1P35222 781 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 LILRA4P59901 499 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 HERC3Q15034 1050 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 PTGES3Q15185 160 aaKnown RBP11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TMEM63BQ5T3F8 832 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CHADLQ6NUI6 762 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 GPR156Q8NFN8 814 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 OR4A15Q8NGL6 344 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 BRSK1Q8TDC3 778 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 SLC22A17Q8WUG5 538 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 AGAP2Q99490 1192 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CRISPLD1Q9H336 500 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.67□□□□□ -0.54
COL9A1-202ENST00000357250 LRP6O75581 1613 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF536O15090 1300 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 DUOX1Q9NRD9 1551 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CCDC162PA2VCL2 907 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 KCNU1A8MYU2 1149 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TSC22D2O75157 780 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 PRNPP04156 253 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 UGT1A5P35504 534 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CLCQ05315 142 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 DLG2Q15700 870 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 NOL9Q5SY16 702 aaKnown RBP11.67□□□□□ -0.54
COL9A1-202ENST00000357250 SCIMPQ6UWF3 145 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 KRT77Q7Z794 578 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 IZUMO1Q8IYV9 350 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF248Q8NDW4 579 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 GMIPQ9P107 970 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 FZD10Q9ULW2 581 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 ATRNL1Q5VV63 1379 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 FAM86C2PA6NEL3 165 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 H3BM21 787 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CHST10O43529 356 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TMCC2O75069 709 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 FKTNO75072 461 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 HCAR3P49019 387 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 FLT3LGP49771 235 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 MANFP55145 182 aaKnown RBP11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TAF13Q15543 124 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 SDHAF4Q5VUM1 108 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 LIN54Q6MZP7 749 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 RHBDF2Q6PJF5 856 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 GK5Q6ZS86 529 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 COMMD2Q86X83 199 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 POC5Q8NA72 575 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 SLC35B2Q8TB61 432 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 COL26A1Q96A83 441 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 CLPTM1LQ96KA5 538 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 HAPLN3Q96S86 360 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 GMLQ99445 158 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 GATA5Q9BWX5 397 aaPredicted RBP11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TXNRD2Q9NNW7 524 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 RBPJLQ9UBG7 517 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 EGFL7Q9UHF1 273 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 MSRAQ9UJ68 235 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 PADI3Q9ULW8 664 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 NPEPPSL1A6NEC2 478 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 LRRC14BA6NHZ5 514 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 SAGE2PA6NJ88 616 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 TREHO43280 583 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 DUSP4Q13115 394 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 GPR107Q5VW38 600 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 BICRALQ6AI39 1079 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 LPGAT1Q92604 370 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF599Q96NL3 588 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 SGK2Q9HBY8 427 aa11.67□□□□□ -0.54
COL9A1-202ENST00000357250 ADAMDEC1O15204 470 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 KERAO60938 352 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 C8GP07360 202 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 DBTP11182 482 aaKnown RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 CORO1AP31146 461 aaKnown RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 SSR2P43308 183 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 FSTL4Q6MZW2 842 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 PTCHD4Q6ZW05 846 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 OTOP3Q7RTS5 596 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 C11orf65Q8NCR3 313 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 NDRG1Q92597 394 aaKnown RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 UPF1Q92900 1129 aaKnown RBP eCLIP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 AARSD1Q9BTE6 412 aaKnown RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 MOXD2PA6NHM9 499 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 ISM1B1AKI9 464 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 AGPSO00116 658 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 INSIG1O15503 277 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 SLC28A2O43868 658 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 UGT2B17O75795 530 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 LDOC1O95751 146 aaPredicted RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 IFNA16P05015 189 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 TEAD4Q15561 434 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 ATP13A5Q4VNC0 1218 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 KBTBD2Q8IY47 623 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 SPATA6LQ8N4H0 392 aa11.66□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF513Q8N8E2 541 aaPredicted RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 DNAJC1Q96KC8 554 aaKnown RBP11.66□□□□□ -0.54
COL9A1-202ENST00000357250 FCRL5Q96RD9 977 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms