RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ITGB6P18564 788 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 HNRNPA2B1P22626 353 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 CD27P26842 260 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 OXTRP30559 389 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SPAM1P38567 509 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 GPR1P46091 355 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SLCO1A2P46721 670 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CCR5P51681 352 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SARNPP82979 210 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 SFSWAPQ12872 951 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 TMEM115Q12893 351 aaPredicted RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 C1orf61Q13536 156 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 LONRF1Q17RB8 773 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SKIDA1Q1XH10 827 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 KIF19Q2TAC6 998 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CTSL3PQ5NE16 218 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 KIAA1161Q6NSJ0 714 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 FAM83HQ6ZRV2 1179 aaPredicted RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 TAS2R42Q7RTR8 314 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 RD3Q7Z3Z2 195 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PIM3Q86V86 326 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 NLRP8Q86W28 1048 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 KCNMB4Q86W47 210 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CEP97Q8IW35 865 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PALM2Q8IXS6 379 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SPATA6LQ8N4H0 392 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 LMNTD1Q8N9Z9 388 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.98□□□□□ -1.77
LIG4-201ENST00000356922 PPHLN1Q8NEY8 458 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 GLYATL1Q969I3 302 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PLEKHG4BQ96PX9 1271 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 IER2Q9BTL4 223 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 UNKQ9C0B0 810 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 TMEM168Q9H0V1 697 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CAB39LQ9H9S4 337 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PARD6AQ9NPB6 346 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 HACD3Q9P035 362 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 FAM8A1Q9UBU6 413 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 RUVBL2Q9Y230 463 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 SNX11Q9Y5W9 270 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 ANKRD12Q6UB98 2062 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CHD8Q9HCK8 2581 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 FAM159BA6NKW6 160 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PSMD11O00231 422 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SDC3O75056 442 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 THEGLP0DJG4 465 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 GIMD1P0DJR0 217 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 ACRV1P26436 265 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 AK4P27144 223 aaPredicted RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 PDHA2P29803 388 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CDKN2DP55273 166 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 IL9RQ01113 521 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CAV1Q03135 178 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 BMPR2Q13873 1038 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 BRD3Q15059 726 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SF3A2Q15428 464 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 ZNF658BQ4V348 819 aaPredicted RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 FAM219BQ5XKK7 198 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 KIAA0930Q6ICG6 404 aaPredicted RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 NRROSQ86YC3 692 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 VRK3Q8IV63 474 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 IQCKQ8N0W5 287 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 NXPE1Q8N323 547 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 BBOF1Q8ND07 529 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 GIMAP7Q8NHV1 300 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 LPGAT1Q92604 370 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 OLFM1Q99784 485 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CLPBQ9H078 707 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 C12orf65Q9H3J6 166 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 VPS37BQ9H9H4 285 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 MRM3Q9HC36 420 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 AASDHPPTQ9NRN7 309 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SAMD15Q9P1V8 674 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 FBXO5Q9UKT4 447 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 IKZF3Q9UKT9 509 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 MTO1Q9Y2Z2 717 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 RP1P56715 2156 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PCDH15Q96QU1 1955 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PRRC2CQ9Y520 2896 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 IGLV3-16A0A075B6K0 115 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SPTY2D1-AS1A0A0U1RR47 76 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 MAGEB16A2A368 324 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PRAMEF26H0Y7S4 382 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 AGPSO00116 658 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 BCAT2O15382 392 aaPredicted RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 NIPSNAP2O75323 286 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 CD38P28907 300 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 FMO4P31512 558 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SUOXP51687 545 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 DCDC1P59894 354 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PRAMEP78395 509 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 ALG11Q2TAA5 492 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PLA2G4EQ3MJ16 856 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PPM1JQ5JR12 505 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 ENPP7Q6UWV6 458 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 LPCAT2Q7L5N7 544 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SNX20Q7Z614 316 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SLC25A45Q8N413 288 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 TRAM1L1Q8N609 369 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 GSDMBQ8TAX9 411 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms