RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 OR56A5P0C7T3 313 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 UGT2B10P36537 528 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 CEBPGP53567 150 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TRIM28Q13263 835 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 PFKFB4Q16877 469 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 COMMD2Q86X83 199 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SPATA9Q9BWV2 254 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF304Q9HCX3 659 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TRIP11Q15643 1979 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SIGLEC16A6NMB1 481 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 GPR1P46091 355 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 CDCA2Q69YH5 1023 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SLC47A2Q86VL8 602 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 C11orf65Q8NCR3 313 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 CAMK1GQ96NX5 476 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 RAVER2Q9HCJ3 691 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SLCO1B3Q9NPD5 702 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 EIF2B3Q9NR50 452 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF69Q9UC07 566 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 BCAS2O75934 225 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 A1BGP04217 495 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TAF13Q15543 124 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ZNHIT3Q15649 155 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 COMMD4Q9H0A8 199 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 PER2O15055 1255 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 BPIFB1Q8TDL5 484 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SEMA6BQ9H3T3 888 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 HCN3Q9P1Z3 774 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 IFNA21P01568 189 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 HLA-DPB1P04440 258 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 PTPN5P54829 565 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 IL31Q6EBC2 164 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 NATD1Q8N6N6 113 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 C1orf109Q9NX04 203 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ANXA2P2A6NMY6 339 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ANXA2P07355 339 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 WDSUB1Q8N9V3 476 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TM9SF3Q9HD45 589 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TLR8Q9NR97 1041 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SIX4Q9UIU6 781 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 A0A0J9YVX5 310 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ALDH3B2P48448 385 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 APLP1P51693 650 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 GNASQ5JWF2 1037 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 COL21A1Q96P44 957 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 FAM53CQ9NYF3 392 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 PADI2Q9Y2J8 665 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 NUP214P35658 2090 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 C12orf71A8MTZ7 269 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 IFNA1P01562 189 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 S100A8P05109 93 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 THEGLP0DJG4 465 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 CYP3A5P20815 502 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 EEFSECP57772 596 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TSPAN5P62079 268 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 C4orf46Q504U0 113 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 PSTKQ8IV42 348 aaKnown RBP12.53□□□□□ -0.4
COL6A3-203ENST00000353578 SPARTQ8N0X7 666 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 OR8K3Q8NH51 312 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 C8orf48Q96LL4 319 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 TRIM36Q9NQ86 728 aa12.53□□□□□ -0.4
COL6A3-203ENST00000353578 ARAP3Q8WWN8 1544 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 GMPRP36959 345 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 SLC1A2P43004 574 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 DRICH1Q6PGQ1 229 aaPredicted RBP12.52□□□□□ -0.4
COL6A3-203ENST00000353578 FAM109AQ8N4B1 249 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 ARHGEF4Q9NR80 690 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 DPP3Q9NY33 737 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 EFCAB7A8K855 629 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 RFXANKO14593 260 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 EGFRP00533 1210 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 IFNA2P01563 188 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 XRCC1P18887 633 aaPredicted RBP12.52□□□□□ -0.4
COL6A3-203ENST00000353578 HACD4Q5VWC8 232 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 SLC4A11Q8NBS3 891 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 ARL11Q969Q4 196 aa12.52□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF486Q96H40 463 aaPredicted RBP12.52□□□□□ -0.4
COL6A3-203ENST00000353578 ZCCHC11Q5TAX3 1644 aaKnown RBP12.52□□□□□ -0.4
COL6A3-203ENST00000353578 INMTO95050 263 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 SBK2P0C263 348 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 EPHA3P29320 983 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 PKLRP30613 574 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CDH13P55290 713 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 C10orf82Q8WW14 230 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 DNAJC1Q96KC8 554 aaKnown RBP12.52□□□□□ -0.41
COL6A3-203ENST00000353578 MARK4Q96L34 752 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 TPK1Q9H3S4 243 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 DDIT4Q9NX09 232 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CYTH4Q9UIA0 394 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 B3GALNT1O75752 331 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 GRAP2O75791 330 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CTPS1P17812 591 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 DAG1Q14118 895 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 MARC1Q5VT66 337 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 GDPD1Q8N9F7 314 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 PANX1Q96RD7 426 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CORO1BQ9BR76 489 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 PIF1Q9H611 641 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 CMAHPQ9Y471 501 aa12.52□□□□□ -0.41
COL6A3-203ENST00000353578 MAGI3Q5TCQ9 1506 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms