RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NRIP1P48552 1158 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 PNLIPRP2P54317 469 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 CLDN20P56880 219 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 KRTAP10-11P60412 298 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 KEAP1Q14145 624 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 MVPQ14764 893 aaKnown RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 SLC39A14Q15043 492 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 NTRK2Q16620 822 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 CFAP58Q5T655 872 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 NSUN5P2Q63ZY6 315 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 RBM23Q86U06 439 aaKnown RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 RNF113BQ8IZP6 322 aaKnown RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 GCSAMQ8N6F7 178 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 RBMXL3Q8N7X1 1067 aaKnown RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 SLC38A9Q8NBW4 561 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 LILRB1Q8NHL6 650 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 SPATA22Q8NHS9 363 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 NUDCD2Q8WVJ2 157 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 UBE2Q2Q8WVN8 375 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 PIGTQ969N2 578 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 DUX5Q96PT3 197 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 MRPL1Q9BYD6 325 aaKnown RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 OSGEPL1Q9H4B0 414 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 C6orf106Q9H6K1 298 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 PSD3Q9NYI0 1048 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 CHORDC1Q9UHD1 332 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 PADI3Q9ULW8 664 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 KLHL20Q9Y2M5 609 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 TTLL3Q9Y4R7 772 aa3.3□□□□□ -1.88
HMGB1-201ENST00000326004 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.3□□□□□ -1.88
HMGB1-201ENST00000326004 LAMC3Q9Y6N6 1575 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 SCN5AQ14524 2016 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 A0A0G2JPF8 293 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 TMEM8BA6NDV4 472 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 HNRNPCL3B7ZW38 293 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ACOT8O14734 319 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PAPSS1O43252 624 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 BEST1O76090 585 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PGM3O95394 542 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ZBTB11O95625 1053 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 GH2P01242 217 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 HSP90AA1P07900 732 aaKnown RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 HNRNPCL4P0DMR1 293 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 NR2F1P10589 423 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 SELLP14151 372 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 TNFRSF8P28908 595 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 GNL1P36915 607 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 NNMTP40261 264 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 RAD52P43351 418 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 MMP14P50281 582 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PDLIM4P50479 330 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 EEF1A1P68104 462 aaKnown RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 SPOCK1Q08629 439 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PCLAFQ15004 111 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 SF3B4Q15427 424 aaKnown RBP eCLIP3.29□□□□□ -1.881e-8■■■□□ 19.1
HMGB1-201ENST00000326004 SYT16Q17RD7 645 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 KRTCAP3Q53RY4 240 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 EEF1A1P5Q5VTE0 462 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 KRT79Q5XKE5 535 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 TMEM198Q66K66 360 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 C16orf54Q6UWD8 224 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF704Q6ZNC4 412 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 CLEC17AQ6ZS10 378 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 C16orf82Q7Z2V1 217 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 GALNT5Q7Z7M9 940 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ADGRA1Q86SQ6 560 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 SFR1Q86XK3 245 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PM20D2Q8IYS1 436 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ZNF34Q8IZ26 560 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 C1orf87Q8N0U7 546 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 RASGEF1CQ8N431 466 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 EMC1Q8N766 993 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 OR5R1Q8NH85 324 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 GSDMBQ8TAX9 411 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 UTP15Q8TED0 518 aaKnown RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PRPF31Q8WWY3 499 aaKnown RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 FIG4Q92562 907 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ABTB1Q969K4 478 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 CDCA5Q96FF9 252 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 CEP295NLQ96MC4 621 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 SEMA3CQ99985 751 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 KIFC3Q9BVG8 833 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 MXD3Q9BW11 206 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 UBTD1Q9HAC8 227 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 EBF2Q9HAK2 575 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PLSCR4Q9NRQ2 329 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 TMEM30AQ9NV96 361 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PAG1Q9NWQ8 432 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 ARHGEF38Q9NXL2 777 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 WSB2Q9NYS7 404 aaPredicted RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 MRPL15Q9P015 296 aaKnown RBP3.29□□□□□ -1.88
HMGB1-201ENST00000326004 MORF4L1Q9UBU8 362 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 DNAJB4Q9UDY4 337 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 RPS6KA6Q9UK32 745 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PADI1Q9ULC6 663 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 KDM6BO15054 1643 aa3.29□□□□□ -1.88
HMGB1-201ENST00000326004 PDS5AQ29RF7 1337 aaKnown RBP3.28□□□□□ -1.88
HMGB1-201ENST00000326004 SAA2-SAA4A0A096LPE2 208 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 A0A1W2PP11 408 aa3.28□□□□□ -1.88
HMGB1-201ENST00000326004 LNP1A1A4G5 178 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms