RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 IKZF3Q9UKT9 509 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 RNF112Q9ULX5 631 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 TLR6Q9Y2C9 796 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 ZNF711Q9Y462 761 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 TIMM22Q9Y584 194 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 PCDHB3Q9Y5E6 796 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 ARL5AQ9Y689 179 aa18.96■□□□□ 0.63
RTN4-201ENST00000317610 FAM234BA2RU67 622 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 LCHNA4D1U4 455 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 M0QZQ0 153 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 STX16O14662 325 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 CRCPO75575 148 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 FGF1P05230 155 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 UROSP10746 265 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 HLA-DPA1P20036 260 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 BRCC3P46736 316 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ALDH3A2P51648 485 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 KCNC4Q03721 635 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 IRF5Q13568 498 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 BTG3Q14201 252 aaPredicted RBP18.95■□□□□ 0.62
RTN4-201ENST00000317610 PRAMEF19Q5SWL8 479 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 PRR23BQ6ZRT6 265 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 SYVN1Q86TM6 617 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 DPP10Q8N608 796 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 OR4L1Q8NH43 312 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 TRUB1Q8WWH5 349 aaKnown RBP18.95■□□□□ 0.62
RTN4-201ENST00000317610 MUS81Q96NY9 551 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 GPN2Q9H9Y4 310 aaPredicted RBP18.95■□□□□ 0.62
RTN4-201ENST00000317610 ZFYVE28Q9HCC9 887 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 MAGEL2Q9UJ55 1249 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ST3GAL5Q9UNP4 418 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 USP22Q9UPT9 525 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 MED16Q9Y2X0 877 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 A0A1W2PQH9 124 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 TULP3O75386 442 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ECI2O75521 394 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ESRRBO95718 433 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 MT-ND1P03886 318 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ZNF182P17025 639 aaPredicted RBP18.95■□□□□ 0.62
RTN4-201ENST00000317610 ELK4P28324 431 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 SHMT2P34897 504 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ARSFP54793 590 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 OR4D2P58180 307 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ERVK-8P63133 956 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 PTPRCAPQ14761 206 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ALFQ53S48 1182 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 BROXQ5VW32 411 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 XAF1Q6GPH4 301 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 PLEKHH3Q7Z736 793 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 HID1Q8IV36 788 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ZC3H7AQ8IWR0 971 aaKnown RBP18.95■□□□□ 0.62
RTN4-201ENST00000317610 SEPHS2Q99611 448 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 FANCEQ9HB96 536 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 ZNF225Q9UK10 706 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 COQ6Q9Y2Z9 468 aa18.95■□□□□ 0.62
RTN4-201ENST00000317610 IGLV3-10A0A075B6K4 115 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 KPNA6O60684 536 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 SNX2O60749 519 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 CNTN5O94779 1100 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 IL12AP29459 219 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 RELAQ04206 551 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 DAG1Q14118 895 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 CENPSQ8N2Z9 138 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 OR2T11Q8NH01 316 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 SNX19Q92543 992 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 NSMCE2Q96MF7 247 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 RNF145Q96MT1 663 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 C1orf50Q9BV19 199 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 FUOMA2VDF0 154 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 SYCE1LA8MT33 242 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 ABCB7O75027 752 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 B3GAT3O94766 335 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 EPOP01588 193 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 ALPLP05186 524 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 OCM2P0CE71 109 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 OCMP0CE72 109 aaPredicted RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 MAP4P27816 1152 aaKnown RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 PRDX3P30048 256 aaKnown RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 MRPS6P82932 125 aaKnown RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 IL10RBQ08334 325 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 TRAF2Q12933 501 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 TIGD2Q4W5G0 525 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 MS4A13Q5J8X5 152 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 RBM48Q5RL73 367 aaKnown RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 GTF2IRD2BQ6EKJ0 949 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 GLYATQ6IB77 296 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 PAQR3Q6TCH7 311 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 GTF2IRD2Q86UP8 949 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 ZFAND4Q86XD8 727 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 OR13C4Q8NGS5 318 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 BRSK1Q8TDC3 778 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 BLOC1S5Q8TDH9 187 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 RAB2BQ8WUD1 216 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 FUBP1Q96AE4 644 aaKnown RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 MTG1Q9BT17 334 aaPredicted RBP18.94■□□□□ 0.62
RTN4-201ENST00000317610 PCTPQ9UKL6 214 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 B3GNT3Q9Y2A9 372 aa18.94■□□□□ 0.62
RTN4-201ENST00000317610 SULT1C4O75897 302 aa18.93■□□□□ 0.62
RTN4-201ENST00000317610 MLYCDO95822 493 aa18.93■□□□□ 0.62
RTN4-201ENST00000317610 CHEK2O96017 543 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms