RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 TMEM63AO94886 807 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 HOXC6P09630 235 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 RAB3AP20336 220 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 HTR1BP28222 390 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ERP29P30040 261 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 HOXA13P31271 388 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CAPZA2P47755 286 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 GLUD2P49448 558 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CCNA1P78396 465 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 MXD4Q14582 209 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 EMC2Q15006 297 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 FAM98CQ17RN3 349 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CCNYL2Q5T2Q4 361 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ANKS3Q6ZW76 656 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CREB3L2Q70SY1 520 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF534Q76KX8 674 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 P3H2Q8IVL5 708 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 SFRP1Q8N474 314 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 RNF148Q8N7C7 305 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 C2orf69Q8N8R5 385 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CYGBQ8WWM9 190 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 DEDD2Q8WXF8 326 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 SEPT8Q92599 483 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 USP13Q92995 863 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 YIPF5Q969M3 257 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 FBXL20Q96IG2 436 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF416Q9BWM5 594 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 HAPLN2Q9GZV7 340 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF224Q9NZL3 707 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 SPATA2Q9UM82 520 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 EDARQ9UNE0 448 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ACOT9Q9Y305 439 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 GRIP1Q9Y3R0 1128 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 USP3Q9Y6I4 520 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 SAC3D1A6NKF1 404 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 C2CD4BA6NLJ0 364 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 NUPL2O15504 423 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CLIC3O95833 236 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 JUNP05412 331 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 PGRP06401 933 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 TYK2P29597 1187 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 HLA-FP30511 346 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 GRK3P35626 688 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 RPL35P42766 123 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 GNPDA1P46926 289 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 DEFA1P59665 94 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 DEFA3P59666 94 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 RPS6P62753 249 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 LRRC74AQ0VAA2 488 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ABRQ12979 859 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 KLF10Q13118 480 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 BTN1A1Q13410 526 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF273Q14593 569 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 TAF1CQ15572 869 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 PARP15Q460N3 678 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 IQCCQ4KMZ1 466 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 FNBP1LQ5T0N5 605 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ARMC4Q5T2S8 1044 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 NXNL2Q5VZ03 156 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 TMEM236Q5W0B7 351 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 C8orf82Q6P1X6 216 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 LCLAT1Q6UWP7 414 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CDHR3Q6ZTQ4 885 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CPNE8Q86YQ8 564 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 RNF135Q8IUD6 432 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 OFCC1Q8IZS5 231 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF366Q8N895 744 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 FAM83FQ8NEG4 500 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 NSUN6Q8TEA1 469 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ST8SIA4Q92187 359 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 POP5Q969H6 163 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 NXNL1Q96CM4 212 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 MARK4Q96L34 752 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 SIGLEC10Q96LC7 697 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 HSFY1Q96LI6 401 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF778Q96MU6 729 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 TEPSINQ96N21 525 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 TSGA13Q96PP4 275 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 CINPQ9BW66 212 aaPredicted RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 IL22Q9GZX6 179 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 QTRT2Q9H974 415 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 RC3H2Q9HBD1 1191 aaKnown RBP6.61□□□□□ -1.35
ZNF540-201ENST00000316433 TM9SF3Q9HD45 589 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ITM2CQ9NQX7 267 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 FBXL12Q9NXK8 326 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 REV1Q9UBZ9 1251 aa6.61□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF541Q9H0D2 1346 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 PLXNB2O15031 1838 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 GRXCR2A6NFK2 248 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 HNRNPCL2B2RXH8 293 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 AP3D1O14617 1153 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 CFLARO15519 480 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 POP4O95707 220 aaKnown RBP6.6□□□□□ -1.35
ZNF540-201ENST00000316433 CFBP00751 764 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 SERPINE1P05121 402 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 ACADMP11310 421 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 SRCP12931 536 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 CPB1P15086 417 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 CD53P19397 219 aa6.6□□□□□ -1.35
ZNF540-201ENST00000316433 CHRNA5P30532 468 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms