RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 GIMAP2Q9UG22 337 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 RAPGEFL1Q9UHV5 662 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 MRPS7Q9Y2R9 242 aaKnown RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 HTRA2O43464 458 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 DLX3O60479 287 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 BCAS2O75934 225 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 PDE9AO76083 593 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 SIX3O95343 332 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 INCA1Q0VD86 236 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 SREBF2Q12772 1141 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 COX10Q12887 443 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 NDUFA5Q16718 116 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 PYDC2Q56P42 97 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 CNSTQ6PJW8 725 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 EPHX4Q8IUS5 362 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 ATAD1Q8NBU5 361 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 OR10A6Q8NH74 314 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 LINGO1Q96FE5 620 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 FTHL17Q9BXU8 183 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 SERHL2Q9H4I8 314 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 FBRSL1Q9HCM7 1045 aaKnown RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 ABCB9Q9NP78 766 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 SERHLQ9NQF3 203 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 CRNNQ9UBG3 495 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 PRKAG2Q9UGJ0 569 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 TNPO3Q9Y5L0 923 aaKnown RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 GON4LQ3T8J9 2241 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 TLR5O60602 858 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 EPB42P16452 691 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 CRY1Q16526 586 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 RFX4Q33E94 735 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 NOL9Q5SY16 702 aaKnown RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 MYDGFQ969H8 173 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 TMIGD2Q96BF3 282 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 PANX1Q96RD7 426 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 TSPAN18Q96SJ8 248 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 FAM126AQ9BYI3 521 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 ASB8Q9H765 288 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 MIEF1Q9NQG6 463 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 PDP1Q9P0J1 537 aaPredicted RBP11.48□□□□□ -0.57
VPS33A-201ENST00000267199 WDR37Q9Y2I8 494 aa11.48□□□□□ -0.57
VPS33A-201ENST00000267199 E9PAM4 449 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ONECUT3O60422 494 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 IFNA14P01570 189 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 MYL12AP19105 171 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 RFX3P48380 749 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 TTPAP49638 278 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 HSPA14Q0VDF9 509 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 CEACAM7Q14002 265 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 QPRTQ15274 297 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ZNF284Q2VY69 593 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 KIAA0408Q6ZU52 694 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 PIK3C3Q8NEB9 887 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 FNDC8Q8TC99 324 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 PPP3R2Q96LZ3 170 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 CDK5RAP1Q96SZ6 601 aaKnown RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 NPEPPSL1A6NEC2 478 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 RFXANKO14593 260 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 MATN3O15232 486 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 LRG1P02750 347 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 IL7RP16871 459 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 LPOP22079 712 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ATP6V0D1P61421 351 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 CNTN1Q12860 1018 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 STARD3Q14849 445 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 COLEC12Q5KU26 742 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 AFTPHQ6ULP2 937 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 GPR180Q86V85 440 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 DENND1CQ8IV53 801 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 STK40Q8N2I9 435 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 SCAIQ8N9R8 606 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 PDPRQ8NCN5 879 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 CAPN10Q9HC96 672 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 CDC14AQ9UNH5 594 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 COL18A1P39060 1754 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 SNTNA6NMZ2 147 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 HOXA2O43364 376 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 AIREO43918 545 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 TSPAN9O75954 239 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 CHRM5P08912 532 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 WARSP23381 471 aaKnown RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 FMO3P31513 532 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 BCL2L1Q07817 233 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 TGFBIQ15582 683 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 HIST2H2ACQ16777 129 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 HIST2H2AA3Q6FI13 130 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 PPP4R4Q6NUP7 873 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ANKRD46Q86W74 232 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 MARVELD2Q8N4S9 558 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 AADATQ8N5Z0 425 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 OR4K2Q8NGD2 314 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 WDR36Q8NI36 951 aaKnown RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 SCAMP5Q8TAC9 235 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ITGB4P16144 1822 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 KRT87PA6NCN2 255 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 IFRD1O00458 451 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ARPC2O15144 300 aa11.47□□□□□ -0.57
VPS33A-201ENST00000267199 ALDOAP04075 364 aaKnown RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 FEN1P39748 380 aaKnown RBP11.47□□□□□ -0.57
VPS33A-201ENST00000267199 SLC1A2P43004 574 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms