RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 C1orf232A0A0U1RR37 186 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 BLACEA4D250 179 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 GRID2O43424 1007 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 PRLP01236 227 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 MYBL1P10243 752 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 SKILP12757 684 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 TYRP1P17643 537 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 SPINT3P49223 89 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 SEPHS1P49903 392 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 MLLT10P55197 1068 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 MAP7Q14244 749 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 STX1AQ16623 288 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 C6orf15Q6UXA7 325 aaPredicted RBP19.17■□□□□ 0.66
CLN3-262ENST00000637699 LRRC49Q8IUZ0 686 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 PHYKPLQ8IUZ5 450 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 GALNT6Q8NCL4 622 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 TEKT4Q8WW24 435 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 TRIM11Q96F44 468 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 C9orf72Q96LT7 481 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 PLEKHG4BQ96PX9 1271 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 PSMG3-AS1Q96PY0 264 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 OSGEPL1Q9H4B0 414 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 EPB41L1Q9H4G0 881 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 FAM83DQ9H4H8 585 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 ARFGAP3Q9NP61 516 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 RBM22Q9NW64 420 aaKnown RBP eCLIP19.17■□□□□ 0.66
CLN3-262ENST00000637699 CROTQ9UKG9 612 aa19.17■□□□□ 0.66
CLN3-262ENST00000637699 MN1Q10571 1320 aaPredicted RBP19.17■□□□□ 0.66
CLN3-262ENST00000637699 SPTAN1Q13813 2472 aaKnown RBP19.16■□□□□ 0.66
CLN3-262ENST00000637699 SPENQ96T58 3664 aaKnown RBP19.16■□□□□ 0.66
CLN3-262ENST00000637699 OR5K4A6NMS3 321 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 MKRN2OSH3BPM6 223 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 MFSD11O43934 449 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 KATNA1O75449 491 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 FURINP09958 794 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 ANKRD34CP0C6C1 535 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 IL4RP24394 825 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 GARSP41250 739 aaKnown RBP19.16■□□□□ 0.66
CLN3-262ENST00000637699 ZNF165P49910 485 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 SH3BP2P78314 561 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 KLHL30Q0D2K2 578 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 PIGHQ14442 188 aaPredicted RBP19.16■□□□□ 0.66
CLN3-262ENST00000637699 C4orf17Q53FE4 359 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 CCDC122Q5T0U0 273 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 ZNF648Q5T619 568 aaPredicted RBP19.16■□□□□ 0.66
CLN3-262ENST00000637699 HENMT1Q5T8I9 393 aaKnown RBP19.16■□□□□ 0.66
CLN3-262ENST00000637699 ATCAYQ86WG3 371 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 ELMO2Q96JJ3 720 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 BTBD6Q96KE9 485 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 TGM7Q96PF1 710 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 OR6C1Q96RD1 312 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 PCDH9Q9HC56 1237 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 KLC4Q9NSK0 619 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 AIPL1Q9NZN9 384 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 OGFRQ9NZT2 677 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 ATXN10Q9UBB4 475 aa19.16■□□□□ 0.66
CLN3-262ENST00000637699 LILRA5A6NI73 299 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 MATN3O15232 486 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 NUAK1O60285 661 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 KRT7P08729 469 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 CD48P09326 243 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 CA4P22748 312 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 CES1P23141 567 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 UBE2IP63279 158 aaKnown RBP19.15■□□□□ 0.66
CLN3-262ENST00000637699 NIPAL4Q0D2K0 466 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 GALNT2Q10471 571 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 ANKRD20A8PQ5CZ79 823 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 ALG1LQ6GMV1 187 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 RASGRP3Q8IV61 690 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 RAVER1Q8IY67 606 aaKnown RBP19.15■□□□□ 0.66
CLN3-262ENST00000637699 AOPEPQ8N6M6 819 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 ARRDC2Q8TBH0 407 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 LRRN4Q8WUT4 740 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 MAML1Q92585 1016 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 STAMBPL1Q96FJ0 436 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 ISCUQ9H1K1 167 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 OR2AG1Q9H205 316 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 CARD9Q9H257 536 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 LRRC4CQ9HCJ2 640 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 PKD2L2Q9NZM6 624 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 SCHIP1Q9P0W5 487 aaPredicted RBP19.15■□□□□ 0.66
CLN3-262ENST00000637699 SLC30A1Q9Y6M5 507 aa19.15■□□□□ 0.66
CLN3-262ENST00000637699 GOLGA6L22H0YM25 854 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 KIAA0754O94854 1291 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 UBXN7O94888 489 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 C9P02748 559 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 ZNF8P17098 575 aaPredicted RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 AMD1P17707 334 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 PRKCIP41743 596 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 SSR1P43307 286 aaKnown RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 CD97P48960 835 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 RPL26P61254 145 aaKnown RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 SLC25A11Q02978 314 aaKnown RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 TIGD7Q6NT04 549 aaPredicted RBP19.14■□□□□ 0.65
CLN3-262ENST00000637699 TCTN3Q6NUS6 607 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 ASB18Q6ZVZ8 466 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 TMEM135Q86UB9 458 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 TRIM48Q8IWZ4 208 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 CCDC13Q8IYE1 715 aa19.14■□□□□ 0.65
CLN3-262ENST00000637699 AVL9Q8NBF6 648 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms