RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 VNN2O95498 520 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 ESRRBO95718 433 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 MLYCDO95822 493 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TSPAN12O95859 305 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CYBBP04839 570 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 UROSP10746 265 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PSMA4P25789 261 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 DIO3P55073 304 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TRIM32Q13049 653 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CRHR2Q13324 411 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 RPS6KA2Q15349 733 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 ARHGAP22Q7Z5H3 698 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 SPRED1Q7Z699 444 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TRPV3Q8NET8 790 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CENPNQ96H22 339 aaPredicted RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 BIRC8Q96P09 236 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TUBA8Q9NY65 449 aaPredicted RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PCTPQ9UKL6 214 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 NOD1Q9Y239 953 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 VPS9D1Q9Y2B5 631 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TANC1Q9C0D5 1861 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 UBA6A0AVT1 1052 aaPredicted RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 MTMR11A4FU01 709 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 H3BNC9 293 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CDC7O00311 574 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 NDUFS3O75489 264 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PRLP01236 227 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PYGLP06737 847 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 FCGR1AP12314 374 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CHRM3P20309 590 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 MYF6P23409 242 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 FASP25445 335 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CDK9P50750 372 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 YBX1P67809 324 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 ATP6AP1Q15904 470 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PDCD4Q53EL6 469 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 SYVN1Q86TM6 617 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CBR4Q8N4T8 237 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TRIML2Q8N7C3 387 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PAPD5Q8NDF8 572 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 MDGA1Q8NFP4 955 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 OR4K2Q8NGD2 314 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 GPR21Q99679 349 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CCDC68Q9H2F9 335 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CRISPLD1Q9H336 500 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CCSER2Q9H7U1 834 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 CAAP1Q9H8G2 361 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TIMMDC1Q9NPL8 285 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 SEMA4BQ9NPR2 832 aaPredicted RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 EGFL7Q9UHF1 273 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 ZNF225Q9UK10 706 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 PTBP2Q9UKA9 531 aaKnown RBP12.68□□□□□ -0.38
LINC00540-203ENST00000631321 GABRQQ9UN88 632 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 FAM50BQ9Y247 325 aa12.68□□□□□ -0.38
LINC00540-203ENST00000631321 TCRBV5S2A0A599 114 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 DYTNA2CJ06 578 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 SAC3D1A6NKF1 404 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 C9JVG2 144 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 INSIG1O15503 277 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 KDELR3O43731 214 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TLR5O60602 858 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CRCPO75575 148 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CKBP12277 381 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 SLC6A4P31645 630 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 RGRP47804 291 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 GSK3BP49841 420 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CCT8P50990 548 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 GPR17Q13304 367 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 MBTPS1Q14703 1052 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 FXNQ16595 210 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 GLT6D1Q7Z4J2 308 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CMTR2Q8IYT2 770 aaKnown RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 OR7D4Q8NG98 312 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 C9orf16Q9BUW7 83 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CINPQ9BW66 212 aaPredicted RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 OCEL1Q9H607 264 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 UBA2Q9UBT2 640 aaPredicted RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 RSL24D1Q9UHA3 163 aaKnown RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 AURKCQ9UQB9 309 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 SLC27A5Q9Y2P5 690 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 FRMPD3Q5JV73 1810 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 NPEPPSL1A6NEC2 478 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 GRXCR2A6NFK2 248 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 C2orf81A6NN90 581 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ACOX3O15254 700 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TBC1D4O60343 1298 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ACSL4O60488 711 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 TRMUO75648 421 aaKnown RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CES1P23141 567 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 PCSK6P29122 969 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 KCNQ1P51787 676 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CDH4P55283 916 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 EEFSECP57772 596 aaKnown RBP12.67□□□□□ -0.38
LINC00540-203ENST00000631321 KCNK10P57789 538 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 ECT2LQ008S8 904 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 SMARCB1Q12824 385 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 NFYCQ13952 458 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 PTPRNQ16849 979 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 FAM171A1Q5VUB5 890 aa12.67□□□□□ -0.38
LINC00540-203ENST00000631321 CFAP52Q8N1V2 620 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms