RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ARL4CP56559 192 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 IL9RQ01113 521 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 CAV1Q03135 178 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 NFATC2Q13469 925 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 PEX6Q13608 980 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 SUZ12Q15022 739 aaKnown RBP18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 HIF1AQ16665 826 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 ALG11Q2TAA5 492 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 GPR33Q49SQ1 333 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 LDLRAP1Q5SW96 308 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 AFTPHQ6ULP2 937 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 MPP5Q8N3R9 675 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 OR13J1Q8NGT2 312 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 OR6P1Q8NGX9 317 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 NETO1Q8TDF5 533 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 OR1E3Q8WZA6 343 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 HDAC10Q969S8 669 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.94■□□□□ 0.622e-7■■■■□ 20.6
SQSTM1-216ENST00000626660 TBATAQ96M53 351 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 ZCCHC2Q9C0B9 1178 aaKnown RBP18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 L2HGDHQ9H9P8 463 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 CYP4F12Q9HCS2 524 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 SMOXQ9NWM0 555 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 SLC2A6Q9UGQ3 507 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 APOBEC3BQ9UH17 382 aaKnown RBP18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 SLC17A4Q9Y2C5 497 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 TMEM98Q9Y2Y6 226 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 DGKBQ9Y6T7 804 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 CEP250Q9BV73 2442 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 PLXNB3Q9ULL4 1909 aa18.94■□□□□ 0.62
SQSTM1-216ENST00000626660 CEACAM5P06731 702 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 IVLP07476 585 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 CTSEP14091 401 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 PAMP19021 973 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 EPHA8P29322 1005 aaPredicted RBP18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 ARSDP51689 593 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 LIMK1P53667 647 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 SLC7A5Q01650 507 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 ACVR1Q04771 509 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 CACNG1Q06432 222 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 SLC14A1Q13336 389 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 BBS9Q3SYG4 887 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 STAMBPL1Q96FJ0 436 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 PDXPQ96GD0 296 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 ZNF778Q96MU6 729 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 TTC25Q96NG3 672 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 SUDS3Q9H7L9 328 aaPredicted RBP18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 CARS2Q9HA77 564 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 TRIM39Q9HCM9 518 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 SPASTQ9UBP0 616 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 PCDHGB2Q9Y5G2 931 aa18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 OAS3Q9Y6K5 1087 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-216ENST00000626660 FAM237BA0A1B0GVD1 139 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 CCDC162PA2VCL2 907 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 VEGFDO43915 354 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 PCDHGA12O60330 932 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 SDC3O75056 442 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 PIAS2O75928 621 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 NMBRP28336 390 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 AKT1P31749 480 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 POLD2P49005 469 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 DRG2P55039 364 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 GUCY2DQ02846 1103 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 GTF2H3Q13889 308 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 SHBQ15464 509 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 INAVAQ3KP66 663 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 FNBP1LQ5T0N5 605 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 GPRC6AQ5T6X5 926 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 MARK2Q7KZI7 788 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 TAS2R42Q7RTR8 314 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 RBFAQ8N0V3 343 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 DDHD1Q8NEL9 900 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 SIGLEC10Q96LC7 697 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 TTC1Q99614 292 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 NAT9Q9BTE0 207 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 OR2AG1Q9H205 316 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 RMI1Q9H9A7 625 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 ARFGAP3Q9NP61 516 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 MRPL40Q9NQ50 206 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 TREX1Q9NSU2 369 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 GRHL1Q9NZI5 618 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 KLF15Q9UIH9 416 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 TMPRSS11EQ9UL52 423 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 SUFUQ9UMX1 484 aa18.92■□□□□ 0.62
SQSTM1-216ENST00000626660 GPR89AB7ZAQ6 455 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 GPR39O43194 453 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 GOT2P00505 430 aaKnown RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 GPR89BP0CG08 455 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 RALBP11234 206 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 MSH3P20585 1137 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 GNPDA1P46926 289 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 DHX9Q08211 1270 aaKnown RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 BNIP3Q12983 259 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 ELOCQ15369 112 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 PRRT3Q5FWE3 981 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 CES3Q6UWW8 571 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 GALNT13Q8IUC8 556 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 NXPE1Q8N323 547 aa18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 FSTL5Q8N475 847 aaPredicted RBP18.91■□□□□ 0.62
SQSTM1-216ENST00000626660 OR4L1Q8NH43 312 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms