RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 IL10RBQ08334 325 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TRAF3Q13114 568 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 UBAP2LQ14157 1087 aaKnown RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 PDGFRLQ15198 375 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TPSAB1Q15661 275 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LDLRAP1Q5SW96 308 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 MED27Q6P2C8 311 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CERS6Q6ZMG9 384 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 DNAJB7Q7Z6W7 309 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LDB1Q86U70 411 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CUZD1Q86UP6 607 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TSEN2Q8NCE0 465 aaKnown RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 NPLOC4Q8TAT6 608 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TNFRSF25Q93038 417 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 PSMG2Q969U7 264 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 APOLD1Q96LR9 279 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 C12orf66Q96MD2 445 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CDH19Q9H159 772 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 SLC25A51Q9H1U9 297 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 NEUROD4Q9HD90 331 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 NDUFA13Q9P0J0 144 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 FZD10Q9ULW2 581 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 MYRFQ9Y2G1 1151 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 GMPPBQ9Y5P6 360 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 IFT172Q9UG01 1749 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 A0A0U1RQJ8 604 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 B4DGG1 531 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TRAFD1O14545 582 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 SUV39H1O43463 412 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LYPLA1O75608 230 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ZNF37AP17032 561 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ADSLP30566 484 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 L1CAMP32004 1257 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ARHGAP1Q07960 439 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 C2orf80Q0P641 193 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 FUT2Q10981 343 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ACAP2Q15057 778 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ZSWIM7Q19AV6 140 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LEMD2Q8NC56 503 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 NUDT4Q9NZJ9 180 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ECDO95905 644 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 VARSP26640 1264 aaKnown RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TMEM63BQ5T3F8 832 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 MZT2AQ6P582 158 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ENPP7Q6UWV6 458 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ARMCX6Q7L4S7 300 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 PTPN18Q99952 460 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 FAM124BQ9H5Z6 455 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 GGA2Q9UJY4 613 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 Q9Y3F1 56 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CICQ96RK0 1608 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 UGT2B17O75795 530 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 BCL10O95999 233 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 GOT2P00505 430 aaKnown RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CST1P01037 141 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 SLC10A6Q3KNW5 377 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CELF5Q8N6W0 485 aaKnown RBP11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ACSS3Q9H6R3 686 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 FBXW11Q9UKB1 542 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CLDN9O95484 217 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 IFNGP01579 166 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 EPHA3P29320 983 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 SLC25A3Q00325 362 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 GBE1Q04446 702 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LRRC32Q14392 662 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 DUPD1Q68J44 220 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 CADM2Q8N3J6 435 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 SPATA22Q8NHS9 363 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 PYDC1Q8WXC3 89 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 LRTM1Q9HBL6 345 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 DNAJC28Q9NX36 388 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 PTGFRNQ9P2B2 879 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 MTRRQ9UBK8 725 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 ERVK-11Q9UQG0 969 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 TCAF1Q9Y4C2 921 aa11.31□□□□□ -0.6
CLIP1-219ENST00000620786 C9IYK1 514 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 GRIN2DO15399 1336 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 AFDNP55196 1824 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 GJA9P57773 515 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 STXBP1P61764 594 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 BST1Q10588 318 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 NRF1Q16656 503 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SPESP1Q6UW49 350 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 RASGRP3Q8IV61 690 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 CKAP2Q8WWK9 683 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 NMD3Q96D46 503 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 OR2AG1Q9H205 316 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 CHRAC1Q9NRG0 131 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 MIOSQ9NXC5 875 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 OGDHLQ9ULD0 1010 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SESN1Q9Y6P5 492 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 RGSL1A5PLK6 1076 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 MAPK10P53779 464 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 TOP3AQ13472 1001 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 UAP1L1Q3KQV9 507 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 ARSIQ5FYB1 569 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 EOGTQ5NDL2 527 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SPATA19Q7Z5L4 167 aa11.3□□□□□ -0.6
CLIP1-219ENST00000620786 RP9Q8TA86 221 aaKnown RBP11.3□□□□□ -0.6
CLIP1-219ENST00000620786 SCAMP5Q8TAC9 235 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms