RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 LDLRAP1Q5SW96 308 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 STXBP5Q5T5C0 1151 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 NAT16Q8N8M0 369 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 PPP1R14BQ96C90 147 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 ASIC4Q96FT7 647 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 IMP4Q96G21 291 aaKnown RBP14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 C8orf48Q96LL4 319 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 SCUBE2Q9NQ36 999 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 GALPQ9UBC7 116 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 UBA2Q9UBT2 640 aaPredicted RBP14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 DOCK6Q96HP0 2047 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 ACSL4O60488 711 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CBFA2T3O75081 653 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 ATE1O95260 518 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CXCL14O95715 111 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CD247P20963 164 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CTNNB1P35222 781 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 TUFMP49411 452 aaKnown RBP14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 PLA2G4EQ3MJ16 856 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CHST15Q7LFX5 561 aaPredicted RBP14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 SLC15A3Q8IY34 581 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CENPSQ8N2Z9 138 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 GPATCH1Q9BRR8 931 aaKnown RBP14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CIPCQ9C0C6 399 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 NAA50Q9GZZ1 169 aaKnown RBP14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 CDYLQ9Y232 598 aa14.4□□□□□ -0.1
SHROOM1-208ENST00000617339 HTR3EA5X5Y0 456 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 HDAC3O15379 428 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 UGT1A6P19224 532 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 UGT1A1P22309 533 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 UGT1A4P22310 534 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 NFKBIAP25963 317 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 UGT1A3P35503 534 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 UGT1A5P35504 534 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 ITGADQ13349 1161 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 SERINC3Q13530 473 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PTPRNQ16849 979 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 AGKQ53H12 422 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 C6orf183Q5T699 404 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 TTC33Q6PID6 262 aaPredicted RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 KDELC1Q6UW63 502 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 TMEM207Q6UWW9 146 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 CAMK1DQ8IU85 385 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 CLDN19Q8N6F1 224 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 SPPL2BQ8TCT7 592 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 NSMCE3Q96MG7 304 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 FKBPLQ9UIM3 349 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 V9GYQ6 96 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF195O14628 629 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 ATP5BP06576 529 aaKnown RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 MMP2P08253 660 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 GNAO1P09471 354 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PIK3CGP48736 1102 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 DEFB103AP81534 67 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 CTBSQ01459 385 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PTK2BQ14289 1009 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 NEDD8Q15843 81 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 ADRM1Q16186 407 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 MANEALQ5VSG8 457 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 EGFLAMQ63HQ2 1017 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 TMEM26Q6ZUK4 368 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PTGR2Q8N8N7 351 aaPredicted RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 ARRDC2Q8TBH0 407 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 FUBP3Q96I24 572 aaKnown RBP eCLIP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 TBCCD1Q9NVR7 557 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 LSM7Q9UK45 103 aaKnown RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 SYN3O14994 580 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 LSM1O15116 133 aaKnown RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 CCL16O15467 120 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PSMD3O43242 534 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 KATNA1O75449 491 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 E2F6O75461 281 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 TIPRLO75663 272 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 GSTT2P0CG29 244 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 GSTT2BP0CG30 244 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 HSPA13P48723 471 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PHEXP78562 749 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 FGD3Q5JSP0 725 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PAQR3Q6TCH7 311 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 CHERPQ8IWX8 916 aaKnown RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 SLC7A5P1Q8MH63 180 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 GABPB2Q8TAK5 448 aaPredicted RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 ING5Q8WYH8 240 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 PLEKHA8Q96JA3 519 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 GMPR2Q9P2T1 348 aaKnown RBP14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 AP4S1Q9Y587 144 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 CNTRLQ7Z7A1 2325 aa14.39□□□□□ -0.11
SHROOM1-208ENST00000617339 KANSL1LA0AUZ9 987 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 RGSL1A5PLK6 1076 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 NIPSNAP2O75323 286 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 PRAMEF12O95522 483 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 PEX11BO96011 259 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 IGHA2P01877 340 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 HMOX2P30519 316 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 ADRA1AP35348 466 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 LBX1P52954 281 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 TRAF2Q12933 501 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 RPS6KA2Q15349 733 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 AGAP9Q5VTM2 703 aa14.38□□□□□ -0.11
SHROOM1-208ENST00000617339 ZFP1Q6P2D0 407 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms