RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CTSCP53634 463 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 DCDC1P59894 354 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 B4GALNT1Q00973 533 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SLC14A1Q13336 389 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 PUM1Q14671 1186 aaKnown RBP eCLIP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 TRADDQ15628 312 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 TRIP6Q15654 476 aaKnown RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 PPP1R21Q6ZMI0 780 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 ADGRG6Q86SQ4 1221 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 BEND7Q8N7W2 519 aaPredicted RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 GLYATL1Q969I3 302 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 BOCQ9BWV1 1114 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 TRIM31Q9BZY9 425 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SPATS2LQ9NUQ6 558 aaKnown RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SYBUQ9NX95 663 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 MROH6A6NGR9 719 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 FLRT2O43155 660 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 MAGEC1O60732 1142 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 MGAT1P26572 445 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SPAM1P38567 509 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 ADCY8P40145 1251 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 TNNT3P45378 269 aaPredicted RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 FNTAP49354 379 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 HNRNPKP61978 463 aaKnown RBP eCLIP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 CTBSQ01459 385 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 PTK2BQ14289 1009 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 N4BP2L1Q5TBK1 243 aaPredicted RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SLC30A9Q6PML9 568 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 CRTC3Q6UUV7 619 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 DET1Q7L5Y6 550 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 LDB1Q86U70 411 aaPredicted RBP13.36□□□□□ -0.27
LINC00540-202ENST00000616974 TRAM1L1Q8N609 369 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 SLC13A1Q9BZW2 595 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 DGKBQ9Y6T7 804 aa13.36□□□□□ -0.27
LINC00540-202ENST00000616974 GOLGA8KD6RF30 607 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 GOLGA8TH3BQL2 631 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 ECEL1O95672 775 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 GRK6P43250 576 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 CDH17Q12864 832 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 SEMA3AQ14563 771 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 MSS51Q4VC12 460 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 PYCR3Q53H96 274 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 DGLUCYQ7Z3D6 616 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 DCP2Q8IU60 420 aaKnown RBP13.35□□□□□ -0.27
LINC00540-202ENST00000616974 SLC35F3Q8IY50 421 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 BTN2A2Q8WVV5 523 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 APOLD1Q96LR9 279 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 PLEKHG4BQ96PX9 1271 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 NAP1L3Q99457 506 aaPredicted RBP13.35□□□□□ -0.27
LINC00540-202ENST00000616974 ZSCAN5AQ9BUG6 496 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 TRABDQ9H4I3 376 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 HOMER3Q9NSC5 361 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 HACD3Q9P035 362 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 RABGEF1Q9UJ41 708 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 KCNK6Q9Y257 313 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 PKP3Q9Y446 797 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 GPSM3Q9Y4H4 160 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 SPTBP11277 2137 aa13.35□□□□□ -0.27
LINC00540-202ENST00000616974 SMG1Q96Q15 3661 aaKnown RBP13.35□□□□□ -0.27
LINC00540-202ENST00000616974 TRBV23OR9-2A0A075B6M9 112 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 SRP72O76094 671 aaKnown RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 NMBRP28336 390 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 MC4RP32245 332 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 PROX2Q3B8N5 592 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 GPRC6AQ5T6X5 926 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 XKR5Q6UX68 686 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 CHST15Q7LFX5 561 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 JAMLQ86YT9 394 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 LILRA3Q8N6C8 439 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 SPATA4Q8NEY3 305 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 OR4C6Q8NH72 309 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 MFSD3Q96ES6 412 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 CDKN2AIPNLQ96HQ2 116 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 NFKBIL1Q9UBC1 381 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 PCYOX1Q9UHG3 505 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 ZNHIT2Q9UHR6 403 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 PCDHGB2Q9Y5G2 931 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 ATMQ13315 3056 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 GOLGA6L10A0A0M3HER8 536 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 CCDC162PA2VCL2 907 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 OR2AG2A6NM03 316 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 C2orf81A6NN90 581 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 HOXC4P09017 264 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 FTH1P19P0C7X4 201 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 ACP5P13686 325 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 NFATC2Q13469 925 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 PPP1R7Q15435 360 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 HP1BP3Q5SSJ5 553 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 RNASEH2BQ5TBB1 312 aaKnown RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 C11orf96Q7Z7L8 435 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 NLRP8Q86W28 1048 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 UNC5BQ8IZJ1 945 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 RASGEF1AQ8N9B8 481 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 NAT8LQ8N9F0 302 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 KYQ8NBH2 561 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 GDAP1Q8TB36 358 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 SGF29Q96ES7 293 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 SCARF2Q96GP6 870 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 CNDP2Q96KP4 475 aaKnown RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 SERPINB12Q96P63 405 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms