RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IST1P53990 364 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 MRPS15P82914 257 aaKnown RBP12.52□□□□□ -0.4
LIG1-221ENST00000613670 PFKPQ01813 784 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 TGFBIQ15582 683 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 UNC50Q53HI1 259 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 CACHD1Q5VU97 1274 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 DCP1BQ8IZD4 617 aaKnown RBP12.52□□□□□ -0.4
LIG1-221ENST00000613670 HTRA1Q92743 480 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 TMBIM1Q969X1 311 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 C16orf70Q9BSU1 422 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 ZYG11BQ9C0D3 744 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 MEAF6Q9HAF1 191 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 GDAP2Q9NXN4 497 aa12.52□□□□□ -0.4
LIG1-221ENST00000613670 CDC7O00311 574 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 C8BP07358 591 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 ZNF12P17014 697 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 SEPHS1P49903 392 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 ARHGEF7Q14155 803 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 MEP1AQ16819 746 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 AP5B1Q2VPB7 878 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 DUSP28Q4G0W2 176 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 CARM1Q86X55 608 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 CD320Q9NPF0 282 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 RASSF1Q9NS23 344 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 FAM105AQ9NUU6 356 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 INTS7Q9NVH2 962 aaKnown RBP12.52□□□□□ -0.41
LIG1-221ENST00000613670 SEC24AO95486 1093 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 S100A5P33763 92 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 HCAR3P49019 387 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 DNAJB13P59910 316 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 TIGD5Q53EQ6 642 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 C14orf80Q86SX3 495 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 CILP2Q8IUL8 1156 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 KCTD13Q8WZ19 329 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 MRGPRX2Q96LB1 330 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 SLC2A13Q96QE2 648 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 C1QTNF1Q9BXJ1 281 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 PARVBQ9HBI1 364 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 IGSF5Q9NSI5 407 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 CMTM6Q9NX76 183 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 HSFX1Q9UBD0 423 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 C3orf18Q9UK00 162 aa12.52□□□□□ -0.41
LIG1-221ENST00000613670 CNOT11Q9UKZ1 510 aaKnown RBP12.52□□□□□ -0.41
LIG1-221ENST00000613670 EVPLLA8MZ36 301 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 H3BMQ9 156 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 SLC7A4O43246 635 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 TBX18O95935 607 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 AGTR2P50052 363 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 ATP6V0D1P61421 351 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 APOFQ13790 326 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 SYTL1Q8IYJ3 562 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 PACRGLQ8N7B6 248 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 ANKFN1Q8N957 763 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 COG8Q96MW5 612 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 RANBP9Q96S59 729 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 TNFRSF12AQ9NP84 129 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 FAIMQ9NVQ4 179 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 PDE10AQ9Y233 779 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 MAGED1Q9Y5V3 778 aaPredicted RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 LOXHD1Q8IVV2 1947 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 ZNFX1Q9P2E3 1918 aaKnown RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 LOC100506127A0A0U1RQW1 187 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 IRAK2O43187 625 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 KPNA6O60684 536 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 ZNF37AP17032 561 aaPredicted RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 IGFBP6P24592 240 aaPredicted RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 APLP1P51693 650 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 DGUOKQ16854 277 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 HMBOX1Q6NT76 420 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 PAGE2Q7Z2X7 111 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 RBM12BQ8IXT5 1001 aaKnown RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 LGI2Q8N0V4 545 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 TMEM40Q8WWA1 233 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 SNX19Q92543 992 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 FEM1AQ9BSK4 669 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 ACTR8Q9H981 624 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 COL1A2P08123 1366 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 CLDN25C9JDP6 229 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 KRT8P05787 483 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 CAPN1P07384 714 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 BMP2P12643 396 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 SLC6A2P23975 617 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 LAPTM4AQ15012 233 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 BRMS1LQ5PSV4 323 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 BORAQ6PGQ7 559 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 R3HCC1LQ7Z5L2 792 aaKnown RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 PLEKHH3Q7Z736 793 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 RTL3Q8N8U3 475 aaKnown RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 MARCH2Q9P0N8 246 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 MAGEL2Q9UJ55 1249 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 PTBP2Q9UKA9 531 aaKnown RBP12.51□□□□□ -0.41
LIG1-221ENST00000613670 TBC1D30Q9Y2I9 924 aa12.51□□□□□ -0.41
LIG1-221ENST00000613670 TCRBV3S1A0A5B6 114 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 F5H5T6 163 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 CPSF4O95639 269 aaKnown RBP12.5□□□□□ -0.41
LIG1-221ENST00000613670 MLYCDO95822 493 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 APOA1P02647 267 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 SBK3P0C264 359 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 PRSS56P0CW18 603 aa12.5□□□□□ -0.41
LIG1-221ENST00000613670 RGS4P49798 205 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms