RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 LRRC40Q9H9A6 602 aa16.04■□□□□ 0.16
LSM4-206ENST00000600289 HOMER3Q9NSC5 361 aa16.04■□□□□ 0.16
LSM4-206ENST00000600289 TTC7AQ9ULT0 858 aaPredicted RBP16.04■□□□□ 0.16
LSM4-206ENST00000600289 DRG1Q9Y295 367 aaKnown RBP16.04■□□□□ 0.16
LSM4-206ENST00000600289 OAS3Q9Y6K5 1087 aaKnown RBP16.04■□□□□ 0.16
LSM4-206ENST00000600289 MGAQ8IWI9 3026 aa16.04■□□□□ 0.16
LSM4-206ENST00000600289 SPTA1P02549 2419 aa16.04■□□□□ 0.16
LSM4-206ENST00000600289 PTPRQQ9UMZ3 2332 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 J3QKU1 62 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 INPP4BO15327 924 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 DNAJC6O75061 913 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 AP2A1O95782 977 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 FGGP02679 453 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 MSNP26038 577 aaKnown RBP16.03■□□□□ 0.16
LSM4-206ENST00000600289 SPAM1P38567 509 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 GNPDA1P46926 289 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 POLD2P49005 469 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 PDE1BQ01064 536 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 ILF3Q12906 894 aaKnown RBP eCLIP16.03■□□□□ 0.16
LSM4-206ENST00000600289 TAF1AQ15573 450 aaPredicted RBP16.03■□□□□ 0.16
LSM4-206ENST00000600289 ALS2CLQ60I27 953 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 TRIM74Q86UV6 250 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 NRROSQ86YC3 692 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 PHYKPLQ8IUZ5 450 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 GPR156Q8NFN8 814 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 OR6C4Q8NGE1 309 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 IFI44Q8TCB0 444 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 BRSK1Q8TDC3 778 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 C1orf54Q8WWF1 131 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 GLYATL1Q969I3 302 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 PBKQ96KB5 322 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 OR2M4Q96R27 311 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 MOSPD1Q9UJG1 213 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 GPR34Q9UPC5 381 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 ZNF148Q9UQR1 794 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 PKP3Q9Y446 797 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 PTPN13Q12923 2485 aa16.03■□□□□ 0.16
LSM4-206ENST00000600289 CES2O00748 559 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 NUAK1O60285 661 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 CEP104O60308 925 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 SLC4A1P02730 911 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 LPOP22079 712 aaPredicted RBP16.02■□□□□ 0.16
LSM4-206ENST00000600289 FDFT1P37268 417 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 ADCY8P40145 1251 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 INSM1Q01101 510 aaPredicted RBP16.02■□□□□ 0.16
LSM4-206ENST00000600289 OLIG2Q13516 323 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 GSE1Q14687 1217 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 CDCP2Q5VXM1 449 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 GUSBP11Q6P575 273 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 DOK6Q6PKX4 331 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 C4orf22Q6V702 233 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 TAF8Q7Z7C8 310 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 C17orf82Q86X59 251 aaPredicted RBP16.02■□□□□ 0.16
LSM4-206ENST00000600289 GALNT13Q8IUC8 556 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 KYQ8NBH2 561 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 TRIM39Q9HCM9 518 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 IL26Q9NPH9 171 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 SMOXQ9NWM0 555 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 PADI4Q9UM07 663 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 TMEM98Q9Y2Y6 226 aa16.02■□□□□ 0.16
LSM4-206ENST00000600289 PIEZO2Q9H5I5 2752 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 C2orf81A6NN90 581 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 GAPDHSO14556 408 aaPredicted RBP16.01■□□□□ 0.15
LSM4-206ENST00000600289 VEGFDO43915 354 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 KIF5CO60282 957 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 NOBOXO60393 691 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 SUN1O94901 812 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 SLC25A14O95258 325 aaPredicted RBP16.01■□□□□ 0.15
LSM4-206ENST00000600289 CRTAMO95727 393 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 ATP1A1P05023 1023 aaKnown RBP16.01■□□□□ 0.15
LSM4-206ENST00000600289 ACTN2P35609 894 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 CTBSQ01459 385 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 SEMA5AQ13591 1074 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 ITGA9Q13797 1035 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 LONRF2Q1L5Z9 754 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 ATP13A5Q4VNC0 1218 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 HES3Q5TGS1 186 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 EFL1Q7Z2Z2 1120 aaKnown RBP16.01■□□□□ 0.15
LSM4-206ENST00000600289 LINC00523Q86TU6 105 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 SLC35F6Q8N357 371 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 PDCD7Q8N8D1 485 aaKnown RBP16.01■□□□□ 0.15
LSM4-206ENST00000600289 CCL4L1Q8NHW4 92 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 WDR48Q8TAF3 677 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 APOL2Q9BQE5 337 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 BPIFA1Q9NP55 256 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 IGSF5Q9NSI5 407 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 PAK5Q9P286 719 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 ST14Q9Y5Y6 855 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 RP1P56715 2156 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 COL12A1Q99715 3063 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 COL6A6A6NMZ7 2263 aa16.01■□□□□ 0.15
LSM4-206ENST00000600289 GLYATL1P3A0A0U1RQE8 302 aa16■□□□□ 0.15
LSM4-206ENST00000600289 CHUKO15111 745 aa16■□□□□ 0.15
LSM4-206ENST00000600289 STX7O15400 261 aaKnown RBP16■□□□□ 0.15
LSM4-206ENST00000600289 OPA1O60313 960 aa16■□□□□ 0.15
LSM4-206ENST00000600289 USP12O75317 370 aa16■□□□□ 0.15
LSM4-206ENST00000600289 ASMTLO95671 621 aa16■□□□□ 0.15
LSM4-206ENST00000600289 MYF5P13349 255 aa16■□□□□ 0.15
LSM4-206ENST00000600289 PNLIPP16233 465 aa16■□□□□ 0.15
LSM4-206ENST00000600289 CXCR5P32302 372 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms