RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 DMPKQ09013 629 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 FBXO30Q8TB52 745 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 CDRT15Q96T59 188 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 LACRTQ9GZZ8 138 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 FNIP2Q9P278 1114 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 WFS1O76024 890 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 ADH5P11766 374 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 ZNF75CPQ92670 426 aaPredicted RBP20.35■□□□□ 0.85
UPF1-207ENST00000599848 GPER1Q99527 375 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 MBD2Q9UBB5 411 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 PCYOX1Q9UHG3 505 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 MCM8Q9UJA3 840 aa20.35■□□□□ 0.85
UPF1-207ENST00000599848 PAIP2BQ9ULR5 123 aaKnown RBP20.35■□□□□ 0.85
UPF1-207ENST00000599848 CLDN9O95484 217 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 SPIBQ01892 262 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 TMPRSS11AQ6ZMR5 421 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 KBTBD8Q8NFY9 601 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 OR4K2Q8NGD2 314 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ZNF599Q96NL3 588 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 CAB39LQ9H9S4 337 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 PTPRHQ9HD43 1115 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 C8orf4Q9NR00 106 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ADGRE2Q9UHX3 823 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 PHF11Q9UIL8 331 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 MAGEL2Q9UJ55 1249 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 SPIN1Q9Y657 262 aaPredicted RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 SNPHO15079 494 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ADSLP30566 484 aaPredicted RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 GRIA4P48058 902 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 LCN1P1Q5VSP4 162 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 AMZ2Q86W34 360 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ECHDC2Q86YB7 292 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 TRIM2Q9C040 744 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 THUMPD1Q9NXG2 353 aaKnown RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 DCXO43602 365 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ARL2P36404 184 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 NSG1P42857 185 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 OC90Q02509 493 aaPredicted RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 CFAP206Q8IYR0 622 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ZCCHC7Q8N3Z6 543 aaKnown RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 LRRC19Q9H756 370 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 SLC40A1Q9NP59 571 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 SEC14L3Q9UDX4 400 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ZFP37Q9Y6Q3 630 aaPredicted RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 PRODHO43272 600 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 CHST10O43529 356 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ACRP10323 421 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ABHD13Q7L211 337 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ZNF483Q8TF39 744 aaPredicted RBP20.34■□□□□ 0.85
UPF1-207ENST00000599848 SEMA4DQ92854 862 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 NOD2Q9HC29 1040 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 DLGAP2Q9P1A6 1054 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 GMPPBQ9Y5P6 360 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 PXDNQ92626 1479 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 RGSL1A5PLK6 1076 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 ITGA2BP08514 1039 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 MAPK12P53778 367 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 RASGEF1BQ0VAM2 473 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 SGCBQ16585 318 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 DEF8Q6ZN54 512 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 BPIFB1Q8TDL5 484 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 C1QTNF1Q9BXJ1 281 aa20.34■□□□□ 0.85
UPF1-207ENST00000599848 DHX15O43143 795 aaKnown RBP20.33■□□□□ 0.85
UPF1-207ENST00000599848 TPD52L2O43399 206 aaKnown RBP20.33■□□□□ 0.85
UPF1-207ENST00000599848 GATBO75879 557 aaKnown RBP20.33■□□□□ 0.85
UPF1-207ENST00000599848 ESR1P03372 595 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 SCNN1AP37088 669 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 RAB25P57735 213 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 ITGB3BPQ13352 177 aaPredicted RBP20.33■□□□□ 0.85
UPF1-207ENST00000599848 TMC5Q6UXY8 1006 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 NYAP1Q6ZVC0 841 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 TMEM192Q8IY95 271 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 SH3RF2Q8TEC5 729 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 OTUB2Q96DC9 234 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 P2RY11Q96G91 374 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 HIC2Q96JB3 615 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 JSRP1Q96MG2 331 aaPredicted RBP20.33■□□□□ 0.85
UPF1-207ENST00000599848 MIPEPQ99797 713 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 NUAK2Q9H093 628 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 USP46P62068 366 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 SULT1C3Q6IMI6 304 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 BNIPLQ7Z465 357 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 SLC30A8Q8IWU4 369 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 NUS1Q96E22 293 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 MTMR8Q96EF0 704 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 KCNF1Q9H3M0 494 aa20.33■□□□□ 0.85
UPF1-207ENST00000599848 CPED1A4D0V7 1026 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 KIR3DL1P43629 444 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 CCDC80Q76M96 950 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 SETD7Q8WTS6 366 aaKnown RBP20.33■□□□□ 0.84
UPF1-207ENST00000599848 PNPLA2Q96AD5 504 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 TMEM125Q96AQ2 219 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 MUC13Q9H3R2 512 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 A0A0J9YVX5 310 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 AGR2O95994 175 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 DLG4P78352 724 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 HNRNPDQ14103 355 aaKnown RBP20.33■□□□□ 0.84
UPF1-207ENST00000599848 ZMYND11Q15326 602 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 GPR33Q49SQ1 333 aa20.33■□□□□ 0.84
UPF1-207ENST00000599848 ZSCAN2Q7Z7L9 614 aaPredicted RBP20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms