RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PCDH18Q9HCL0 1135 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 OGFRQ9NZT2 677 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 SCHIP1Q9P0W5 487 aaPredicted RBP8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 PDP2Q9P2J9 529 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 RPS6KL1Q9Y6S9 549 aa8.56□□□□□ -1.04
SHKBP1-220ENST00000599716 A0A0J9YYE9 177 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 A6NCN8 305 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 PSMD11O00231 422 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 POLR1CO15160 346 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 KIF1CO43896 1103 aaKnown RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 MTX2O75431 263 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 KATNA1O75449 491 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 DLGAP3O95886 979 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 PRLP01236 227 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 TRBC1P01850 177 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 PIRTP0C851 137 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 RNF224P0DH78 156 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 DESP17661 470 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 DLSTP36957 453 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 ARL4AP40617 200 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 STAT5AP42229 794 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 HCAR3P49019 387 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 STC1P52823 247 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 EPHB1P54762 984 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 RAB15P59190 212 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 PPP1CAP62136 330 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 GPLD1P80108 840 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 MYL5Q02045 173 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 DPTQ07507 201 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 NIPAL4Q0D2K0 466 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CHAF1BQ13112 559 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 SQSTM1Q13501 440 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 ASIC2Q16515 512 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 DPYSL2Q16555 572 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CLPPQ16740 277 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 LACTB2Q53H82 288 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 ALS2CLQ60I27 953 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 IYDQ6PHW0 289 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CRTC3Q6UUV7 619 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CEACAM20Q6UY09 585 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 AOPEPQ8N6M6 819 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 APOBEC4Q8WW27 367 aaKnown RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 KIAA1143Q96AT1 154 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CATSPER2Q96P56 530 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 TGM7Q96PF1 710 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 ULBP3Q9BZM4 244 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 OSGEPL1Q9H4B0 414 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 AKIRIN1Q9H9L7 192 aaPredicted RBP8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 LMBRD1Q9NUN5 540 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 DONSONQ9NYP3 566 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CHMP5Q9NZZ3 219 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 TRIM10Q9UDY6 481 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 SLC23A2Q9UGH3 650 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 ANAPC2Q9UJX6 822 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 CROTQ9UKG9 612 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 KCNMB2Q9Y691 235 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 SLC30A1Q9Y6M5 507 aa8.55□□□□□ -1.04
SHKBP1-220ENST00000599716 FN1P02751 2386 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 CDC14CA4D256 554 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 DDX3YO15523 660 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 ZW10O43264 779 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 KIAA0754O94854 1291 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 TIAF1O95411 115 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 HLA-DQB2P05538 268 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF8P17098 575 aaPredicted RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 IL4RP24394 825 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 MAP4P27816 1152 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 TEAD1P28347 426 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 HSPA9P38646 679 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 SSR1P43307 286 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 CDH6P55285 790 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 RPS18P62269 152 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 SLC25A11Q02978 314 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 ABHD18Q0P651 414 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 GALNT3Q14435 633 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 WDR74Q6RFH5 385 aaPredicted RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 B4GALNT4Q76KP1 1039 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 ATCAYQ86WG3 371 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 LZTR1Q8N653 840 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 EXD1Q8NHP7 514 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 SSC4DQ8WTU2 575 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 NSMCE1Q8WV22 266 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 SPOCK2Q92563 424 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 RSC1A1Q92681 617 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 MIB2Q96AX9 1013 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 EID2BQ96D98 161 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 PLEKHG4BQ96PX9 1271 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 OR6C1Q96RD1 312 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 TDRD1Q9BXT4 1180 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 TRIM55Q9BYV6 548 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 CEP41Q9BYV8 373 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 OR2AG1Q9H205 316 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 SARS2Q9NP81 518 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 RBM22Q9NW64 420 aaKnown RBP eCLIP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 SIDT1Q9NXL6 827 aaKnown RBP8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 ATXN10Q9UBB4 475 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 CPNE7Q9UBL6 633 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 TUBD1Q9UJT1 453 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 DNAJC16Q9Y2G8 782 aa8.54□□□□□ -1.04
SHKBP1-220ENST00000599716 PPIL1Q9Y3C6 166 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms