RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NPNTQ6UXI9 565 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 BZW1Q7L1Q6 419 aaKnown RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 DTX1Q86Y01 620 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 CNGA4Q8IV77 575 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 VSTM4Q8IW00 320 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 RHOT1Q8IXI2 618 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 IL22RA1Q8N6P7 574 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 CNTD1Q8N815 330 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 JPH3Q8WXH2 748 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 ART4Q93070 314 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 RNF25Q96BH1 459 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 IMP4Q96G21 291 aaKnown RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 OLFM3Q96PB7 478 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 CHP1Q99653 195 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 ZSCAN5AQ9BUG6 496 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 DDA1Q9BW61 102 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 GPR63Q9BZJ6 419 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SLC25A51Q9H1U9 297 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 TSPY26PQ9H489 355 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 OSGEPL1Q9H4B0 414 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 MAGEE1Q9HCI5 957 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SLC39A1Q9NY26 324 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 TMEM9Q9P0T7 183 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 TBC1D29Q9UFV1 150 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 CNOT6Q9ULM6 557 aaKnown RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 SHOC2Q9UQ13 582 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 ZNF711Q9Y462 761 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 PCDHGA4Q9Y5G9 962 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 PCDHGA3Q9Y5H0 932 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 PCYT1BQ9Y5K3 369 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 SCN8AQ9UQD0 1980 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 IGSF10Q6WRI0 2623 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 A0A0A6YYK5 440 aaPredicted RBP9.69□□□□□ -0.86
VRK3-216ENST00000599342 KIR2DS5A0A0G2JLQ3 304 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 A0A0G2JNG1 304 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 OR5K4A6NMS3 321 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 EFCAB7A8K855 629 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 A8MU76 341 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 GPR89AB7ZAQ6 455 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 B8ZZF3 427 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 J3QKU1 62 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 KIR2DS3K7RE56 304 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 EML2O95834 649 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 PIRTP0C851 137 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 GPR89BP0CG08 455 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 EPHA4P54764 986 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 CDK18Q07002 472 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 TFDP2Q14188 446 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 KIR2DS5Q14953 304 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 SLC14A2Q15849 920 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 INSCQ1MX18 579 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 SNAP47Q5SQN1 464 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.69□□□□□ -0.86
VRK3-216ENST00000599342 DCAF12Q5T6F0 453 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 PDPK2PQ6A1A2 396 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 IYDQ6PHW0 289 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 WDR74Q6RFH5 385 aaPredicted RBP9.69□□□□□ -0.86
VRK3-216ENST00000599342 CRTC3Q6UUV7 619 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 XKR5Q6UX68 686 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 TRAM1L1Q8N609 369 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 UNC13CQ8NB66 2214 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 RNF214Q8ND24 703 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 NCSTNQ92542 709 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 EXTL1Q92935 676 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 ARHGEF17Q96PE2 2063 aaPredicted RBP9.69□□□□□ -0.86
VRK3-216ENST00000599342 TRIB3Q96RU7 358 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 SRPK1Q96SB4 655 aaKnown RBP9.69□□□□□ -0.86
VRK3-216ENST00000599342 ASPSCR1Q9BZE9 553 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 OR2AG1Q9H205 316 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 EPB41L1Q9H4G0 881 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 TRIM39Q9HCM9 518 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 ARFGAP3Q9NP61 516 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 ATXN10Q9UBB4 475 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 INTUQ9ULD6 942 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 HEMK1Q9Y5R4 338 aaPredicted RBP9.69□□□□□ -0.86
VRK3-216ENST00000599342 B3GALT1Q9Y5Z6 326 aa9.69□□□□□ -0.86
VRK3-216ENST00000599342 B4E171 279 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 AKR1B15C9JRZ8 316 aaPredicted RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 PSTPIP1O43586 416 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 NDST3O95803 873 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 MT-CYBP00156 380 aaPredicted RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 ZNF8P17098 575 aaPredicted RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 COMTP21964 271 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 TSPAN7P41732 249 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 NOP2P46087 812 aaKnown RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 NR2C2P49116 596 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 PLA2G4EQ3MJ16 856 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 TEX44Q53QW1 395 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 KAZNQ674X7 775 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 MFSD7Q6UXD7 560 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 B4GALNT4Q76KP1 1039 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 TMC3Q7Z5M5 1100 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 TRIM48Q8IWZ4 208 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 CACNA2D3Q8IZS8 1091 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 GPR26Q8NDV2 337 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 SPATA22Q8NHS9 363 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 TFB1MQ8WVM0 346 aaKnown RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 GLYATL1Q969I3 302 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 PMEPA1Q969W9 287 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms