RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KCNJ13O60928 360 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 MMP2P08253 660 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ITGB6P18564 788 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 XRCC1P18887 633 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 CASP14P31944 242 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ARSDP51689 593 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 GBE1Q04446 702 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 MAP7Q14244 749 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 IHHQ14623 411 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 PTPRRQ15256 657 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ASTE1Q2TB18 679 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ATP13A4Q4VNC1 1196 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 NKAIN2Q5VXU1 208 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 SLC9A4Q6AI14 798 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 CYB5D1Q6P9G0 228 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 BORAQ6PGQ7 559 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ATG14Q6ZNE5 492 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 RFLNAQ6ZTI6 216 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 MARK2Q7KZI7 788 aaKnown RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 NT5DC3Q86UY8 548 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 PLXDC1Q8IUK5 500 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 RHOT2Q8IXI1 618 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 TRAM1L1Q8N609 369 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 OR8K1Q8NGG5 319 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ART4Q93070 314 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 SLC45A3Q96JT2 553 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 DNAJC7Q99615 494 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 MAK16Q9BXY0 300 aaKnown RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 SPRY4Q9C004 299 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ZMYND15Q9H091 742 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 SLC25A18Q9H1K4 315 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ZNHIT6Q9NWK9 470 aaKnown RBP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.47□□□□□ -0.25
TRIM28-211ENST00000597968 TBC1D29Q9UFV1 150 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 PILRAQ9UKJ1 303 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 PLEKHM1Q9Y4G2 1056 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 B3GALT1Q9Y5Z6 326 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 ADGRG1Q9Y653 693 aa13.47□□□□□ -0.25
TRIM28-211ENST00000597968 MN1Q10571 1320 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 ZNF891A8MT65 544 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 FADS2P1A8MWK0 482 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 CHUKO15111 745 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 INPP4BO15327 924 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 VEGFDO43915 354 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 RAD1O60671 282 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 MTA2O94776 668 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 MAP3K6O95382 1288 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 JCHAINP01591 159 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 CD86P42081 329 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 SLC1A1P43005 524 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 NOP2P46087 812 aaKnown RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 NR2C2P49116 596 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TAS2R40P59535 323 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 MC1RQ01726 317 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 ABHD18Q0P651 414 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 SLC10A2Q12908 348 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 NFATC3Q12968 1075 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 ZNF569Q5MCW4 686 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 ZFYVE27Q5T4F4 411 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 ZDHHC20Q5W0Z9 365 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 CCDC70Q6NSX1 233 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 WASH2PQ6VEQ5 465 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TMC3Q7Z5M5 1100 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TRIM74Q86UV6 250 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 VASH2Q86V25 355 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 FAM129CQ86XR2 697 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 CPNE8Q86YQ8 564 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 CACNA2D3Q8IZS8 1091 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 NLGN4XQ8N0W4 816 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 PLD5Q8N7P1 536 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 NLGN4YQ8NFZ3 816 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 KIAA1143Q96AT1 154 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TADA1Q96BN2 335 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 IMP4Q96G21 291 aaKnown RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 OLFM3Q96PB7 478 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 VPS35Q96QK1 796 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TRIB3Q96RU7 358 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TIMM29Q9BSF4 260 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 SLC25A51Q9H1U9 297 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 DEF6Q9H4E7 631 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 WASH6PQ9NQA3 447 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 CPNE7Q9UBL6 633 aa13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TMEM184BQ9Y519 407 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 OAS3Q9Y6K5 1087 aaKnown RBP13.46□□□□□ -0.25
TRIM28-211ENST00000597968 TENM4Q6N022 2769 aa13.46□□□□□ -0.26
TRIM28-211ENST00000597968 EFCAB7A8K855 629 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 KCNK1O00180 336 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 APOL1O14791 398 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 KMOO15229 486 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 CBFA2T2O43439 604 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 SUV39H1O43463 412 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 SLC25A14O95258 325 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-211ENST00000597968 ATP1A1P05023 1023 aaKnown RBP13.45□□□□□ -0.26
TRIM28-211ENST00000597968 TPM1P09493 284 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 GJC1P36383 396 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 CDK18Q07002 472 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 SRSF6Q13247 344 aaKnown RBP13.45□□□□□ -0.26
TRIM28-211ENST00000597968 TCEAL1Q15170 157 aa13.45□□□□□ -0.26
TRIM28-211ENST00000597968 CNTD1Q8N815 330 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms