RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TBC1D10A	Q9BXI6	508 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	ASPSCR1	Q9BZE9	553 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	APMAP	Q9HDC9	416 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	SARS2	Q9NP81	518 aa	Known RBP	10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	HAUS2	Q9NVX0	235 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	GEMIN8	Q9NWZ8	242 aa	Known RBP	10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	PKD2L2	Q9NZM6	624 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	ATXN10	Q9UBB4	475 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	KLHL3	Q9UH77	587 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	LUC7L2	Q9Y383	392 aa	Known RBP	10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	COL12A1	Q99715	3063 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	ZFC3H1	O60293	1989 aa	Known RBP	10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	HECTD1	Q9ULT8	2610 aa		10.42	□□□□□ -0.74
LSM4-205	ENST00000597776	ANKRD66	B4E2M5	251 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	GRID2	O43424	1007 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PPFIA2	O75334	1257 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	KRT7	P08729	469 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PRKAR1A	P10644	381 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	SFTPC	P11686	197 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	F3	P13726	295 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	ZNF8	P17098	575 aa	Predicted RBP	10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	MX2	P20592	715 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	CASP14	P31944	242 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	POLE2	P56282	527 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	RAB15	P59190	212 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	TPM4	P67936	248 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	MC2R	Q01718	297 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PLA2G4E	Q3MJ16	856 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	BORA	Q6PGQ7	559 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	CRTC3	Q6UUV7	619 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	B4GALNT4	Q76KP1	1039 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	TIPARP	Q7Z3E1	657 aa	Known RBP	10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	ARHGAP22	Q7Z5H3	698 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PTRH1	Q86Y79	214 aa	Known RBP	10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	MAP7D3	Q8IWC1	876 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PLD5	Q8N7P1	536 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	GPR26	Q8NDV2	337 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	CCHCR1	Q8TD31	782 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	COL26A1	Q96A83	441 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	RNF157	Q96PX1	679 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	HERPUD2	Q9BSE4	406 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	SPATA16	Q9BXB7	569 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	ADGRE3	Q9BY15	652 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	SLC25A18	Q9H1K4	315 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	OR2AG1	Q9H205	316 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	OSGEPL1	Q9H4B0	414 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	STN1	Q9H668	368 aa	Known RBP	10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	RMI1	Q9H9A7	625 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PRDM8	Q9NQV8	689 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	IFNK	Q9P0W0	207 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	UVRAG	Q9P2Y5	699 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	CPNE7	Q9UBL6	633 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	IL17B	Q9UHF5	180 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	PILRA	Q9UKJ1	303 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	SHOC2	Q9UQ13	582 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	HEY1	Q9Y5J3	304 aa		10.41	□□□□□ -0.74
LSM4-205	ENST00000597776	LOC101059948	A0A1B0GTJ6	334 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	LRRD1	A4D1F6	860 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	NKX2-8	O15522	239 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	ARHGAP6	O43182	974 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	NUAK1	O60285	661 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	H2AFZ	P0C0S5	128 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	KDELR1	P24390	212 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	GFER	P55789	205 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	UBE2I	P63279	158 aa	Known RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	IFI35	P80217	286 aa	Predicted RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	PPID	Q08752	370 aa	Known RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	AP1B1	Q10567	949 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	KCNAB2	Q13303	367 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	MESD	Q14696	234 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	PCSK7	Q16549	785 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	ZNF569	Q5MCW4	686 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	NPNT	Q6UXI9	565 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	H2AFV	Q71UI9	128 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	SLC9B2	Q86UD5	537 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	PHYKPL	Q8IUZ5	450 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	RAVER1	Q8IY67	606 aa	Known RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	NLGN4X	Q8N0W4	816 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	SH3KBP1	Q96B97	665 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	ZNF830	Q96NB3	372 aa	Predicted RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	AGAP3	Q96P47	875 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	PLEKHG4B	Q96PX9	1271 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	TEFM	Q96QE5	360 aa	Known RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	TRIB3	Q96RU7	358 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	SPRY4	Q9C004	299 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	CARD9	Q9H257	536 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	GPN2	Q9H9Y4	310 aa	Predicted RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	ZFYVE1	Q9HBF4	777 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	KLC4	Q9NSK0	619 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	OGFR	Q9NZT2	677 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	SLC23A2	Q9UGH3	650 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	ADGRG1	Q9Y653	693 aa		10.4	□□□□□ -0.74
LSM4-205	ENST00000597776	KIR2DS5	A0A0G2JLQ3	304 aa		10.39	□□□□□ -0.75
LSM4-205	ENST00000597776		A0A0G2JNG1	304 aa		10.39	□□□□□ -0.75
LSM4-205	ENST00000597776	RGSL1	A5PLK6	1076 aa		10.39	□□□□□ -0.75
LSM4-205	ENST00000597776	C3orf70	A6NLC5	250 aa	Predicted RBP	10.39	□□□□□ -0.75
LSM4-205	ENST00000597776	ZNF891	A8MT65	544 aa	Predicted RBP	10.39	□□□□□ -0.75

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