RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 DPTQ07507 201 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 EIF2B5Q13144 721 aaKnown RBP14.9□□□□□ -0.02
TRIM28-207ENST00000597136 ANKRD20A4Q4UJ75 823 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 UBAP2Q5T6F2 1119 aaKnown RBP14.9□□□□□ -0.02
TRIM28-207ENST00000597136 TSTD2Q5T7W7 516 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 UNC5AQ6ZN44 842 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 MREGQ8N565 214 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 MFSD3Q96ES6 412 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 TTC25Q96NG3 672 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 FCRL3Q96P31 734 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-207ENST00000597136 ELF4Q99607 663 aaPredicted RBP14.9□□□□□ -0.02
TRIM28-207ENST00000597136 FAM83DQ9H4H8 585 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 IL17CQ9P0M4 197 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 SLC2A6Q9UGQ3 507 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 RIMKLBQ9ULI2 386 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 RPS6KL1Q9Y6S9 549 aa14.9□□□□□ -0.02
TRIM28-207ENST00000597136 KNTC1P50748 2209 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 TMEM202A6NGA9 273 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 RIPK2O43353 540 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 FOXD2O60548 495 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-207ENST00000597136 USP1O94782 785 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 ACSL3O95573 720 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 TSHRP16473 764 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 LPOP22079 712 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-207ENST00000597136 PSMA3P25788 255 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 SSTR1P30872 391 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 HMGCLP35914 325 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 THOP1P52888 689 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 YPEL5P62699 121 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 CRYMQ14894 314 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 ALS2CLQ60I27 953 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 RAET1GQ6H3X3 334 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 IL27RAQ6UWB1 636 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 C3orf62Q6ZUJ4 267 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 DCP2Q8IU60 420 aaKnown RBP14.89□□□□□ -0.03
TRIM28-207ENST00000597136 NRSN1Q8IZ57 195 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 FAM174AQ8TBP5 190 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 STYXQ8WUJ0 223 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 EPB41L4BQ9H329 900 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 TCEAL2Q9H3H9 227 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-207ENST00000597136 ARFGAP3Q9NP61 516 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 TREX1Q9NSU2 369 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 DNAAF2Q9NVR5 837 aaKnown RBP14.89□□□□□ -0.03
TRIM28-207ENST00000597136 PKD2L2Q9NZM6 624 aa14.89□□□□□ -0.03
TRIM28-207ENST00000597136 CNOT6Q9ULM6 557 aaKnown RBP14.89□□□□□ -0.03
TRIM28-207ENST00000597136 A0A1B0GTQ1 180 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ZCWPW2A0A1B0GU75 182 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 FADS2P1A8MWK0 482 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 SCAMP1O15126 338 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 MAGEC1O60732 1142 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 CER1O95813 267 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 FUCA1P04066 466 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 GSTA2P09210 222 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 CD59P13987 128 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 CA5AP35218 305 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 HSD17B3P37058 310 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 GPR1P46091 355 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ACVR1Q04771 509 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 UAP1Q16222 522 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 SKIDA1Q1XH10 827 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 RSPO4Q2I0M5 234 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 SPANXN3Q5MJ09 141 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 HENMT1Q5T8I9 393 aaKnown RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ENPP7Q6UWV6 458 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 CAPN12Q6ZSI9 719 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ZNF765Q7L2R6 523 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 TRIM74Q86UV6 250 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 HEATR4Q86WZ0 1026 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 GATAD2AQ86YP4 633 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 OR4K2Q8NGD2 314 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 OR13C4Q8NGS5 318 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 OR13J1Q8NGT2 312 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 UBLCP1Q8WVY7 318 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ANKRD7Q92527 254 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 PEX13Q92968 403 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 TSACCQ96A04 125 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ZNF669Q96BR6 464 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 DNAJC1Q96KC8 554 aaKnown RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 TEX101Q9BY14 249 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 VPS37BQ9H9H4 285 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 ERVMER34-1Q9H9K5 563 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 MRPL40Q9NQ50 206 aaKnown RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 TM7SF3Q9NS93 570 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 NLE1Q9NVX2 485 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-207ENST00000597136 DNAJC28Q9NX36 388 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 FAM169AQ9Y6X4 670 aa14.88□□□□□ -0.03
TRIM28-207ENST00000597136 PTPRBP23467 1997 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 CCL22O00626 93 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 INPP4BO15327 924 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 STX7O15400 261 aaKnown RBP14.87□□□□□ -0.03
TRIM28-207ENST00000597136 SDC3O75056 442 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 SPAG6O75602 509 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 RXRGP48443 463 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 TMPRSS15P98073 1019 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 NFATC4Q14934 902 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 NLRP8Q86W28 1048 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 RBFAQ8N0V3 343 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.87□□□□□ -0.031e-6■■■■■ 41.8
TRIM28-207ENST00000597136 GSDMBQ8TAX9 411 aa14.87□□□□□ -0.03
TRIM28-207ENST00000597136 C19orf43Q9BQ61 176 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms