RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 OR2AG1Q9H205 316 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 TRIM39Q9HCM9 518 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 ATXN10Q9UBB4 475 aa23.66■■□□□ 1.38
SHMT1-206ENST00000579558 R3HDM2Q9Y2K5 976 aaKnown RBP23.66■■□□□ 1.38
SHMT1-206ENST00000579558 TCRBV7S2A1N4TA0A589 114 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 RHPN2P1A8MT19 583 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 D6RAR5 112 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 NUAK1O60285 661 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 CCDC175P0C221 793 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 ACP5P13686 325 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 ZNF8P17098 575 aaPredicted RBP23.65■■□□□ 1.38
SHMT1-206ENST00000579558 PDX1P52945 283 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 C3orf38Q5JPI3 329 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 SPRED1Q7Z699 444 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 ARL14Q8N4G2 192 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 UBE2Q2Q8WVN8 375 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 PPP1R2P1Q96PQ5 205 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 APOL2Q9BQE5 337 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 POLR1BQ9H9Y6 1135 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 IL17CQ9P0M4 197 aa23.65■■□□□ 1.38
SHMT1-206ENST00000579558 C5orf60A6NFR6 353 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 GRID2O43424 1007 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 SPAM1P38567 509 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 ZDHHC20Q5W0Z9 365 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 ADGRG6Q86SQ4 1221 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 FAM71DQ8N9W8 422 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 LZTFL1Q9NQ48 299 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 SATB2Q9UPW6 733 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 KCNK6Q9Y257 313 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 PKP3Q9Y446 797 aa23.64■■□□□ 1.37
SHMT1-206ENST00000579558 ANKRD11Q6UB99 2663 aaPredicted RBP23.64■■□□□ 1.37
SHMT1-206ENST00000579558 GPR89AB7ZAQ6 455 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 BUD23O43709 281 aaKnown RBP23.63■■□□□ 1.37
SHMT1-206ENST00000579558 TLX3O43711 291 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-206ENST00000579558 NRDCO43847 1150 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 GPR89BP0CG08 455 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 ADRA1AP35348 466 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 ACTN2P35609 894 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 LSSP48449 732 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 OLIG2Q13516 323 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 ATP13A5Q4VNC0 1218 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 RANBP10Q6VN20 620 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 ARHGEF18Q6ZSZ5 1173 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 ZNF438Q7Z4V0 828 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 B3GNT8Q7Z7M8 397 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 SLC35B2Q8TB61 432 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 VPS35Q96QK1 796 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 IL26Q9NPH9 171 aa23.63■■□□□ 1.37
SHMT1-206ENST00000579558 ATXN7L1Q9ULK2 861 aaPredicted RBP23.63■■□□□ 1.37
SHMT1-206ENST00000579558 MTX2O75431 263 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 CCZ1BP86790 482 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 CCZ1P86791 482 aaPredicted RBP23.62■■□□□ 1.37
SHMT1-206ENST00000579558 B4GALNT1Q00973 533 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 TBC1D25Q3MII6 688 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 CRTC3Q6UUV7 619 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 FAM151BQ6UXP7 276 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 ZNF662Q6ZS27 426 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 LSMEM2Q8N112 164 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 GDAP1Q8TB36 358 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 LRRC45Q96CN5 670 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 DCBLD2Q96PD2 775 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 ALS2CR12Q96Q35 445 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 TMEM121Q9BTD3 319 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 FOXP3Q9BZS1 431 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 EPB41L5Q9HCM4 733 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP23.62■■□□□ 1.37
SHMT1-206ENST00000579558 TMPRSS11EQ9UL52 423 aa23.62■■□□□ 1.37
SHMT1-206ENST00000579558 UNC13CQ8NB66 2214 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 URB1O60287 2271 aaKnown RBP23.61■■□□□ 1.37
SHMT1-206ENST00000579558 TRBV23OR9-2A0A075B6M9 112 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 A0A1W2PNU3 283 aaPredicted RBP23.61■■□□□ 1.37
SHMT1-206ENST00000579558 STX7O15400 261 aaKnown RBP23.61■■□□□ 1.37
SHMT1-206ENST00000579558 ZW10O43264 779 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 VEGFDO43915 354 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 PPFIA2O75334 1257 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 ALDH4A1P30038 563 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 INHBCP55103 352 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 OR1D5P58170 312 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 RPS6KA1Q15418 735 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 CHRNA6Q15825 494 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 MEI1Q5TIA1 1274 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 WDR36Q8NI36 951 aaKnown RBP23.61■■□□□ 1.37
SHMT1-206ENST00000579558 ATG4AQ8WYN0 398 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 FGF11Q92914 225 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 TMEM74Q96NL1 305 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 TBL1YQ9BQ87 522 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 TBC1D29Q9UFV1 150 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 ARL5AQ9Y689 179 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 PKD1L2Q7Z442 2459 aa23.61■■□□□ 1.37
SHMT1-206ENST00000579558 CCDC187A0A096LP49 1063 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 GLYATL1P3A0A0U1RQE8 302 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 C2orf81A6NN90 581 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 TMX2-CTNND1H3BSU7 103 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 CHUKO15111 745 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 PPM1DO15297 605 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 B4GAT1O43505 415 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 SNX2O60749 519 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 DXOO77932 396 aaKnown RBP23.6■■□□□ 1.37
SHMT1-206ENST00000579558 EML2O95834 649 aa23.6■■□□□ 1.37
SHMT1-206ENST00000579558 LPOP22079 712 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms