RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 KIR2DS5A0A0G2JLQ3 304 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 A0A0G2JNG1 304 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 LOC101059948A0A1B0GTJ6 334 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 OR5K4A6NMS3 321 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 ANKRD66B4E2M5 251 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 KIR2DS3K7RE56 304 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 NKX2-8O15522 239 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 NUAK1O60285 661 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 MMP2P08253 660 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 GBE1Q04446 702 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 KIR2DS5Q14953 304 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 ALKBH5Q6P6C2 394 aaKnown RBP20.84■□□□□ 0.93
VPS53-216ENST00000574029 CPNE8Q86YQ8 564 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 PQLC3Q8N755 202 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 CCHCR1Q8TD31 782 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 LRRN4Q8WUT4 740 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 KIAA1143Q96AT1 154 aaPredicted RBP20.84■□□□□ 0.93
VPS53-216ENST00000574029 HDAC11Q96DB2 347 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 EFHD1Q9BUP0 239 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 MLPHQ9BV36 600 aaPredicted RBP20.84■□□□□ 0.93
VPS53-216ENST00000574029 CARD9Q9H257 536 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 EPB41L1Q9H4G0 881 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 APMAPQ9HDC9 416 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 ADGRG1Q9Y653 693 aa20.84■□□□□ 0.93
VPS53-216ENST00000574029 UBR5O95071 2799 aaPredicted RBP20.84■□□□□ 0.93
VPS53-216ENST00000574029 TLN1Q9Y490 2541 aaKnown RBP20.83■□□□□ 0.93
VPS53-216ENST00000574029 GRID2O43424 1007 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 MX2P20592 715 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 GJC1P36383 396 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 CLCNKAP51800 687 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 SLC10A2Q12908 348 aaPredicted RBP20.83■□□□□ 0.93
VPS53-216ENST00000574029 PTRH1Q86Y79 214 aaKnown RBP20.83■□□□□ 0.93
VPS53-216ENST00000574029 MAP7D3Q8IWC1 876 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 CCDC13Q8IYE1 715 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 AVL9Q8NBF6 648 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 ATXN10Q9UBB4 475 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 CPNE7Q9UBL6 633 aa20.83■□□□□ 0.93
VPS53-216ENST00000574029 MN1Q10571 1320 aaPredicted RBP20.82■□□□□ 0.92
VPS53-216ENST00000574029 SYCE3A1L190 88 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 LILRA5A6NI73 299 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 SNX2O60749 519 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 STK17BO94768 372 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 PROSCO94903 275 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 CD86P42081 329 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 MAPK9P45984 424 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 TAS2R40P59535 323 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 ZBED6P86452 979 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 ABHD18Q0P651 414 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 CDC20Q12834 499 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 NFKBIBQ15653 356 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 EID2BQ96D98 161 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 TBC1D10AQ9BXI6 508 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 TRIT1Q9H3H1 467 aaKnown RBP20.82■□□□□ 0.92
VPS53-216ENST00000574029 PRDM8Q9NQV8 689 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 DTLQ9NZJ0 730 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 CAPN11Q9UMQ6 739 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 NENFQ9UMX5 172 aa20.82■□□□□ 0.92
VPS53-216ENST00000574029 DLGAP3O95886 979 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 ANKRD34CP0C6C1 535 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 ZNF8P17098 575 aaPredicted RBP20.81■□□□□ 0.92
VPS53-216ENST00000574029 UBE2IP63279 158 aaKnown RBP20.81■□□□□ 0.92
VPS53-216ENST00000574029 COLEC12Q5KU26 742 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 PLXDC1Q8IUK5 500 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 PHYKPLQ8IUZ5 450 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 UNC5BQ8IZJ1 945 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 CNTD1Q8N815 330 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 CCNYQ8ND76 341 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 PLEKHG4BQ96PX9 1271 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 ADGRE3Q9BY15 652 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 UCK1Q9HA47 277 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 TRIM39Q9HCM9 518 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 SIDT1Q9NXL6 827 aaKnown RBP20.81■□□□□ 0.92
VPS53-216ENST00000574029 KLHL3Q9UH77 587 aa20.81■□□□□ 0.92
VPS53-216ENST00000574029 ZNF106Q9H2Y7 1883 aaKnown RBP20.81■□□□□ 0.92
VPS53-216ENST00000574029 GPR89AB7ZAQ6 455 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 POLR1CO15160 346 aaPredicted RBP20.8■□□□□ 0.92
VPS53-216ENST00000574029 JCHAINP01591 159 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 C9P02748 559 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 KRT7P08729 469 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 GPR89BP0CG08 455 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 PRKAR1AP10644 381 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 IFI35P80217 286 aaPredicted RBP20.8■□□□□ 0.92
VPS53-216ENST00000574029 FANCCQ00597 558 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 PPIDQ08752 370 aaKnown RBP20.8■□□□□ 0.92
VPS53-216ENST00000574029 MAP7Q14244 749 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 SKIDA1Q1XH10 827 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 CRTC2Q53ET0 693 aaPredicted RBP20.8■□□□□ 0.92
VPS53-216ENST00000574029 CPLX3Q8WVH0 158 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 IQCDQ96DY2 449 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 TRIB3Q96RU7 358 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 EPN3Q9H201 632 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 ZFYVE1Q9HBF4 777 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 OGFRQ9NZT2 677 aa20.8■□□□□ 0.92
VPS53-216ENST00000574029 KCNK1O00180 336 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 CHUKO15111 745 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 XRCC1P18887 633 aaPredicted RBP20.79■□□□□ 0.92
VPS53-216ENST00000574029 OAS2P29728 719 aaKnown RBP20.79■□□□□ 0.92
VPS53-216ENST00000574029 DCDC1P59894 354 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 ZBTB17Q13105 803 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 GALNT3Q14435 633 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms