RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 NUDT9Q9BW91 350 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 RAB6CQ9H0N0 254 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 TBC1D29Q9UFV1 150 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 LIMA1Q9UHB6 759 aaKnown RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 CD84Q9UIB8 345 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 DNAJC12Q9UKB3 198 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 SNX7Q9UNH6 387 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 KCNK6Q9Y257 313 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 PRKAB1Q9Y478 270 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 ZNF106Q9H2Y7 1883 aaKnown RBP10.95□□□□□ -0.66
VPS53-207ENST00000570510 ADGRG4Q8IZF6 3080 aa10.95□□□□□ -0.66
VPS53-207ENST00000570510 LILRA5A6NI73 299 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 WASH4PA8MWX3 477 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 PSMD11O00231 422 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 DAPK3O43293 454 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 DIAPH2O60879 1101 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 C9P02748 559 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 KLK3P07288 261 aaPredicted RBP10.94□□□□□ -0.66
VPS53-207ENST00000570510 PNMA6AP0CW24 399 aaPredicted RBP10.94□□□□□ -0.66
VPS53-207ENST00000570510 ACP5P13686 325 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 CYP11B1P15538 503 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 DESP17661 470 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 LPOP22079 712 aaPredicted RBP10.94□□□□□ -0.66
VPS53-207ENST00000570510 CDH5P33151 784 aaPredicted RBP10.94□□□□□ -0.66
VPS53-207ENST00000570510 TYRO3Q06418 890 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 IL10RAQ13651 578 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 TMCO4Q5TGY1 634 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 IRGCQ6NXR0 463 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 ADAMTSL4Q6UY14 1074 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 FAM92BQ6ZTR7 304 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 USP45Q70EL2 814 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 MED25Q71SY5 747 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 ZNF677Q86XU0 584 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 TMEM102Q8N9M5 508 aaPredicted RBP10.94□□□□□ -0.66
VPS53-207ENST00000570510 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.94□□□□□ -0.66
VPS53-207ENST00000570510 EXD1Q8NHP7 514 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 TM9SF4Q92544 642 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 SGSM3Q96HU1 749 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 LURAP1Q96LR2 239 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 RUFY1Q96T51 708 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 STK33Q9BYT3 514 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 OSGEPL1Q9H4B0 414 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 COPG2Q9UBF2 871 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 NEU3Q9UQ49 428 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 OSGIN2Q9Y236 505 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 PCDHGC4Q9Y5F7 938 aa10.94□□□□□ -0.66
VPS53-207ENST00000570510 ANKRD62A6NC57 917 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 GOLGA6L3A6NEY3 463 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 DFFAO00273 331 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 TRAFD1O14545 582 aaPredicted RBP10.93□□□□□ -0.66
VPS53-207ENST00000570510 KLHL41O60662 606 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 ZG16O60844 167 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 CEACAM4O75871 244 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 ITGA3P26006 1051 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 PTPN9P43378 593 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 PAPOLAP51003 745 aaKnown RBP10.93□□□□□ -0.66
VPS53-207ENST00000570510 TPI1P60174 286 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 DPTQ07507 201 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 ZNF235Q14590 738 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 RFTN1Q14699 578 aaPredicted RBP10.93□□□□□ -0.66
VPS53-207ENST00000570510 VWA5B1Q5TIE3 1220 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 KLHDC7AQ5VTJ3 777 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 NAA35Q5VZE5 725 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 PWWP2BQ6NUJ5 590 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 BPHLQ86WA6 291 aaPredicted RBP10.93□□□□□ -0.66
VPS53-207ENST00000570510 TMEM126BQ8IUX1 230 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 FAM71AQ8IYT1 594 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 ARFGAP1Q8N6T3 406 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 ST6GALNAC3Q8NDV1 305 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 UBE2Q2Q8WVN8 375 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 NTAN1Q96AB6 310 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 FCRL4Q96PJ5 515 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 ERGIC2Q96RQ1 377 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 RANBP9Q96S59 729 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 PDFQ9HBH1 243 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 SAMSN1Q9NSI8 373 aaKnown RBP10.93□□□□□ -0.66
VPS53-207ENST00000570510 C5AR2Q9P296 337 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 MYO6Q9UM54 1294 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 APCP25054 2843 aa10.93□□□□□ -0.66
VPS53-207ENST00000570510 LGALS16A8MUM7 142 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 KIF1CO43896 1103 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 CPNE3O75131 537 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 SOCS5O75159 536 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 ATP1A1P05023 1023 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 SNRPB2P08579 225 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 CCDC172P0C7W6 258 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 KRT3P12035 628 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 COX6B1P14854 86 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 UCHL3P15374 230 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 NELFEP18615 380 aaKnown RBP10.92□□□□□ -0.66
VPS53-207ENST00000570510 VAV2P52735 878 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 HDAC4P56524 1084 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 ACY1Q03154 408 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 KRT31Q15323 416 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 DPY19L2P1Q6NXN4 242 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 TMEM26Q6ZUK4 368 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 BBS5Q8N3I7 341 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 TTC30BQ8N4P2 665 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 ZADH2Q8N4Q0 377 aa10.92□□□□□ -0.66
VPS53-207ENST00000570510 SCAMP4Q969E2 229 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms