RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PPANQ9NQ55 473 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 SLC35C2Q9NQQ7 365 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZDHHC7Q9NXF8 308 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 OR6C2Q9NZP2 312 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 JKAMPQ9P055 326 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 IFNKQ9P0W0 207 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ZNF212Q9UDV6 495 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ADD3Q9UEY8 706 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 LIMA1Q9UHB6 759 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 CPSF3Q9UKF6 684 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 SLC45A2Q9UMX9 530 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ERVK-19Q9WJR5 959 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 STXBP5LQ9Y2K9 1186 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ACOT9Q9Y305 439 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PRELID3BQ9Y3B1 194 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 PCDHA3Q9Y5H8 950 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 TRPV2Q9Y5S1 764 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 SNX14Q9Y5W7 946 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CSNK1G3Q9Y6M4 447 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 MAU2Q9Y6X3 613 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 KIF20BQ96Q89 1820 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 ARHGEF28Q8N1W1 1705 aaKnown RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 TROQ12816 1431 aaPredicted RBP3.27□□□□□ -1.89
VPS35-208ENST00000568612 PTPRKQ15262 1439 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 CD109Q6YHK3 1445 aa3.27□□□□□ -1.89
VPS35-208ENST00000568612 EIF2AK4Q9P2K8 1649 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 TTC37Q6PGP7 1564 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CEP170BQ9Y4F5 1589 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 N4BP2Q86UW6 1770 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 ASXL1Q8IXJ9 1541 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 hCG_1642624A0A1W2PR95 340 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZNF233A6NK53 670 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZNF785A8K8V0 405 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 L7N2F9 121 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 KPNA4O00629 521 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 TOR1AO14656 332 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 RASGRF2O14827 1237 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 RIPK2O43353 540 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NOS1APO75052 506 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 SOCS5O75159 536 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NDUFS6O75380 124 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 TOM1L1O75674 476 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CRTAPO75718 401 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 CDK14O94921 469 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 UNC5CO95185 931 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CLPTM1O96005 669 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PLGP00747 810 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 TFRCP02786 760 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 FTLP02792 175 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 IFNA16P05015 189 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ASGR1P07306 291 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 EGR2P11161 476 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 DBTP11182 482 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 GM2AP17900 193 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CCNA2P20248 432 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PDCP20941 246 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SLC5A2P31639 672 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CXCR5P32302 372 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CDH5P33151 784 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 IL6STP40189 918 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 HTR2BP41595 481 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SLCO1A2P46721 670 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 NPTX2P47972 431 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ARHGDIAP52565 204 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 XIAPP98170 497 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 IL1RL1Q01638 556 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FPGSQ05932 587 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 SLC34A1Q06495 639 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ASPHQ12797 758 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TBX2Q13207 712 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 IFIT5Q13325 482 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 SNAPC2Q13487 334 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 HNRNPDQ14103 355 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 MXD4Q14582 209 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 KCNAB1Q14722 419 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 MTF1Q14872 753 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 C16orf72Q14CZ0 275 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 KARSQ15046 597 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 CCDC6Q16204 474 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 CAMK4Q16566 473 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZNF829Q3KNS6 432 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 USP41Q3LFD5 358 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 LRIT3Q3SXY7 679 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FLYWCH1Q4VC44 716 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FAM76BQ5HYJ3 339 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 BRMS1LQ5PSV4 323 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 HECTD3Q5T447 861 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ERMARDQ5T6L9 678 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TTC22Q5TAA0 569 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PXDC1Q5TGL8 231 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 FAM109BQ6ICB4 259 aaPredicted RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 LIN54Q6MZP7 749 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 PRMT9Q6P2P2 845 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ALKBH5Q6P6C2 394 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 SHQ1Q6PI26 577 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 CLEC2AQ6UVW9 174 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 ZYG11AQ6WRX3 759 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 RBM44Q6ZP01 1051 aaKnown RBP3.26□□□□□ -1.89
VPS35-208ENST00000568612 NIPA1Q7RTP0 329 aa3.26□□□□□ -1.89
VPS35-208ENST00000568612 TAS2R42Q7RTR8 314 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms