RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TTC30BQ8N4P2 665 aa18.2■□□□□ 0.5
CLN3-214ENST00000565140 TRAM1L1Q8N609 369 aa18.2■□□□□ 0.5
CLN3-214ENST00000565140 SRPK1Q96SB4 655 aaKnown RBP18.2■□□□□ 0.5
CLN3-214ENST00000565140 ZSCAN5AQ9BUG6 496 aa18.2■□□□□ 0.5
CLN3-214ENST00000565140 OR2AG1Q9H205 316 aa18.2■□□□□ 0.5
CLN3-214ENST00000565140 GBA3Q9H227 469 aa18.2■□□□□ 0.5
CLN3-214ENST00000565140 TRIM39Q9HCM9 518 aa18.2■□□□□ 0.5
CLN3-214ENST00000565140 AHCTF1Q8WYP5 2266 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 CCDC187A0A096LP49 1063 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 RHPN2P1A8MT19 583 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 NUAK1O60285 661 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 TJP3O95049 919 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ALDH4A1P30038 563 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 HMGCLP35914 325 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 INHBCP55103 352 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 CCDC173Q0VFZ6 552 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 LRP8Q14114 963 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ZNF569Q5MCW4 686 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ANKRD20A2Q5SQ80 823 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ANKRD20A1Q5TYW2 823 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ANKRD20A3Q5VUR7 823 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 DARS2Q6PI48 645 aaKnown RBP18.19■□□□□ 0.5
CLN3-214ENST00000565140 IGF2-ASQ6U949 168 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ADGRG6Q86SQ4 1221 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 CDKL3Q8IVW4 592 aaPredicted RBP18.19■□□□□ 0.5
CLN3-214ENST00000565140 WDR36Q8NI36 951 aaKnown RBP18.19■□□□□ 0.5
CLN3-214ENST00000565140 GLYATL1Q969I3 302 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 LIN37Q96GY3 246 aaPredicted RBP18.19■□□□□ 0.5
CLN3-214ENST00000565140 ZNF106Q9H2Y7 1883 aaKnown RBP18.19■□□□□ 0.5
CLN3-214ENST00000565140 RMI1Q9H9A7 625 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 EPB41L5Q9HCM4 733 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 RAD18Q9NS91 495 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 KCNK6Q9Y257 313 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 PCDHGA8Q9Y5G5 932 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 ADGRG1Q9Y653 693 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 CAPN6Q9Y6Q1 641 aa18.19■□□□□ 0.5
CLN3-214ENST00000565140 KCNN4O15554 427 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 RRP8O43159 456 aaKnown RBP18.18■□□□□ 0.5
CLN3-214ENST00000565140 GRID2O43424 1007 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 ACP5P13686 325 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 CETN2P41208 172 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 ERVPABLB-1P60509 514 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 ZFP36L1Q07352 338 aaKnown RBP18.18■□□□□ 0.5
CLN3-214ENST00000565140 OLIG2Q13516 323 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 PEX6Q13608 980 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 NR1D2Q14995 579 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 AMZ1Q400G9 498 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 KHDC1Q4VXA5 237 aaKnown RBP18.18■□□□□ 0.5
CLN3-214ENST00000565140 USP53Q70EK8 1073 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 PDZD3Q86UT5 571 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 SYCE1Q8N0S2 351 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 BLOC1S5Q8TDH9 187 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 CARD9Q9H257 536 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 TRABDQ9H4I3 376 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 RDH14Q9HBH5 336 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 IL17CQ9P0M4 197 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 TBC1D29Q9UFV1 150 aa18.18■□□□□ 0.5
CLN3-214ENST00000565140 MIF4GDA9UHW6 222 aaKnown RBP18.17■□□□□ 0.5
CLN3-214ENST00000565140 AGRPO00253 132 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 BUD23O43709 281 aaKnown RBP18.17■□□□□ 0.5
CLN3-214ENST00000565140 MTX2O75431 263 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 TNFSF15O95150 251 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 HGFP14210 728 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 HLA-DPA1P20036 260 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 PSMB4P28070 264 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 CD1CP29017 333 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 RBMS1P29558 406 aaKnown RBP18.17■□□□□ 0.5
CLN3-214ENST00000565140 CCKBRP32239 447 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 ADRA1AP35348 466 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 ABCG1P45844 678 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 PCBP4P57723 403 aaKnown RBP18.17■□□□□ 0.5
CLN3-214ENST00000565140 ATP13A5Q4VNC0 1218 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 NKAIN2Q5VXU1 208 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 PDPK2PQ6A1A2 396 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 ZNF574Q6ZN55 896 aaPredicted RBP18.17■□□□□ 0.5
CLN3-214ENST00000565140 LRRC69Q6ZNQ3 347 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 RAB11FIP2Q7L804 512 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 SLITRK4Q8IW52 837 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 TXLNBQ8N3L3 684 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 UBL4BQ8N7F7 174 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 CCDC110Q8TBZ0 833 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 SLC37A2Q8TED4 501 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 NAF1Q96HR8 494 aaKnown RBP18.17■□□□□ 0.5
CLN3-214ENST00000565140 HES6Q96HZ4 224 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 TMEM74Q96NL1 305 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 PLEKHG4BQ96PX9 1271 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 FICDQ9BVA6 458 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 FSD1LQ9BXM9 530 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 SEMA6CQ9H3T2 930 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 IL26Q9NPH9 171 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 THSD1Q9NS62 852 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 SLC23A2Q9UGH3 650 aa18.17■□□□□ 0.5
CLN3-214ENST00000565140 TCRBV7S2A1N4TA0A589 114 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 A6NCN8 305 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 CDRT15L2A8MXV6 281 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 TMX2-CTNND1H3BSU7 103 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 CHUKO15111 745 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 ANXA9O76027 345 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 CA5AP35218 305 aa18.16■□□□□ 0.5
CLN3-214ENST00000565140 UGT1A5P35504 534 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms