RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 LYSMD3Q7Z3D4 306 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 SLC9B2Q86UD5 537 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 CCNYQ8ND76 341 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 SYN2Q92777 582 aaPredicted RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 FATE1Q969F0 183 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 SH3KBP1Q96B97 665 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 ZNF670Q9BS34 389 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 HERPUD2Q9BSE4 406 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 MLPHQ9BV36 600 aaPredicted RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 STN1Q9H668 368 aaKnown RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 PRDM8Q9NQV8 689 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 FBXO8Q9NRD0 319 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 PKD2L2Q9NZM6 624 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 ATXN10Q9UBB4 475 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 CPNE7Q9UBL6 633 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 AMACRQ9UHK6 382 aa16.68■□□□□ 0.26
CLN3-211ENST00000564091 RPL26L1Q9UNX3 145 aaKnown RBP16.68■□□□□ 0.26
CLN3-211ENST00000564091 SDK2Q58EX2 2172 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 A0A1W2PQJ5 194 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 ANKRD66B4E2M5 251 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 KCNK1O00180 336 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 GRID2O43424 1007 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 NUAK1O60285 661 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 STK17BO94768 372 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 F3P13726 295 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 ZNF8P17098 575 aaPredicted RBP16.67■□□□□ 0.26
CLN3-211ENST00000564091 COLEC12Q5KU26 742 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 RAVER1Q8IY67 606 aaKnown RBP16.67■□□□□ 0.26
CLN3-211ENST00000564091 CCDC13Q8IYE1 715 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 CCHCR1Q8TD31 782 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 KIAA1143Q96AT1 154 aaPredicted RBP16.67■□□□□ 0.26
CLN3-211ENST00000564091 EID2BQ96D98 161 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 CATSPER2Q96P56 530 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 RMI1Q9H9A7 625 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 ZNF71Q9NQZ8 489 aaPredicted RBP16.67■□□□□ 0.26
CLN3-211ENST00000564091 HAUS2Q9NVX0 235 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 DTLQ9NZJ0 730 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 SCHIP1Q9P0W5 487 aaPredicted RBP16.67■□□□□ 0.26
CLN3-211ENST00000564091 PTPN13Q12923 2485 aa16.67■□□□□ 0.26
CLN3-211ENST00000564091 KIR2DS5A0A0G2JLQ3 304 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 A0A0G2JNG1 304 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 KIR2DS3K7RE56 304 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 POLR1CO15160 346 aaPredicted RBP16.66■□□□□ 0.26
CLN3-211ENST00000564091 CAPN5O15484 640 aaPredicted RBP16.66■□□□□ 0.26
CLN3-211ENST00000564091 PROSCO94903 275 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 MX2P20592 715 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 PBX1P40424 430 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 EPHA4P54764 986 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 ZBED6P86452 979 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 FANCCQ00597 558 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 GALNT3Q14435 633 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 KIR2DS5Q14953 304 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 PDK2Q15119 407 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 ATP1A1-AS1Q5TC04 95 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 ALS2CLQ60I27 953 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 CAVIN1Q6NZI2 390 aaKnown RBP16.66■□□□□ 0.26
CLN3-211ENST00000564091 KDELC2Q7Z4H8 507 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 MAP7D3Q8IWC1 876 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 CNTD1Q8N815 330 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 FAF2Q96CS3 445 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 PLEKHG4BQ96PX9 1271 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 ZPBPQ9BS86 351 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 SPATA16Q9BXB7 569 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.66■□□□□ 0.26
CLN3-211ENST00000564091 EPN3Q9H201 632 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 OR2AG1Q9H205 316 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 CARD9Q9H257 536 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 KLC4Q9NSK0 619 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 CTTNBP2NLQ9P2B4 639 aa16.66■□□□□ 0.26
CLN3-211ENST00000564091 NBASA2RRP1 2371 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 RGSL1A5PLK6 1076 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 PIRTP0C851 137 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 SLC2A4P14672 509 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 TYRP1P17643 537 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 OAS2P29728 719 aaKnown RBP16.65■□□□□ 0.26
CLN3-211ENST00000564091 MAN1A1P33908 653 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 GFERP55789 205 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 UBE2IP63279 158 aaKnown RBP16.65■□□□□ 0.26
CLN3-211ENST00000564091 ABHD18Q0P651 414 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 CDC20Q12834 499 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 ZBTB17Q13105 803 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 IGFBP7Q16270 282 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 DEFB109BQ30KR1 87 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 ZFYVE27Q5T4F4 411 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 C16orf46Q6P387 395 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 CRTC3Q6UUV7 619 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 PHYKPLQ8IUZ5 450 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 RAPGEF5Q92565 580 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 HDAC11Q96DB2 347 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 CEP41Q9BYV8 373 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 BRD8Q9H0E9 1235 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 OSGEPL1Q9H4B0 414 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 ZFYVE1Q9HBF4 777 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 SLC23A2Q9UGH3 650 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 TUBD1Q9UJT1 453 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 CAPN11Q9UMQ6 739 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 SHOC2Q9UQ13 582 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 TMEM184BQ9Y519 407 aaPredicted RBP16.65■□□□□ 0.26
CLN3-211ENST00000564091 ADGRG1Q9Y653 693 aa16.65■□□□□ 0.26
CLN3-211ENST00000564091 SPENQ96T58 3664 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms