RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SRPK1Q96SB4 655 aaKnown RBP17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 ZSCAN5AQ9BUG6 496 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 DDA1Q9BW61 102 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 TRIM39Q9HCM9 518 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 PCDHB11Q9Y5F2 797 aa17.04■□□□□ 0.32
VPS9D1-203ENST00000563798 SETXQ7Z333 2677 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 ZFC3H1O60293 1989 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 KIR2DS5A0A0G2JLQ3 304 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 A0A0G2JNG1 304 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 OR5K4A6NMS3 321 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 STMND1H3BQB6 276 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 KIR2DS3K7RE56 304 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 CHUKO15111 745 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 GRID2O43424 1007 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 KRT1P04264 644 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 F3P13726 295 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 EPHA4P54764 986 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 HHEXQ03014 270 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 TBX2Q13207 712 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 SRSF6Q13247 344 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 GALNT3Q14435 633 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 KIR2DS5Q14953 304 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 PRKD1Q15139 912 aaPredicted RBP17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 MANEAQ5SRI9 462 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 NPNTQ6UXI9 565 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 BZW1Q7L1Q6 419 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 ARHGAP22Q7Z5H3 698 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 CNGA4Q8IV77 575 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 TRAM1L1Q8N609 369 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 AVL9Q8NBF6 648 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 GPR26Q8NDV2 337 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 CCDC112Q8NEF3 446 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 OR10G6Q8NH81 332 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 TEKT5Q96M29 485 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 AGAP3Q96P47 875 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 SLC38A3Q99624 504 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 GLOD4Q9HC38 313 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 ATXN10Q9UBB4 475 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 PRKAB1Q9Y478 270 aa17.03■□□□□ 0.32
VPS9D1-203ENST00000563798 PRR19A6NJB7 356 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 B8ZZF3 427 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 DUX1O43812 170 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 NDST3O95803 873 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 CSTF2P33240 577 aaKnown RBP eCLIP17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 CDKN2BP42772 138 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 TFDP2Q14188 446 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 LINC00303Q3SY05 128 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 ZNF569Q5MCW4 686 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 MFSD7Q6UXD7 560 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 SLC9B2Q86UD5 537 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 RFX6Q8HWS3 928 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 BMPERQ8N8U9 685 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 DTX3LQ8TDB6 740 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 RNF25Q96BH1 459 aaPredicted RBP17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 CEP41Q9BYV8 373 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 ASPSCR1Q9BZE9 553 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 EPB41L1Q9H4G0 881 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 STN1Q9H668 368 aaKnown RBP17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 UCK1Q9HA47 277 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 TMEM9Q9P0T7 183 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 KCNK6Q9Y257 313 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 ZNF711Q9Y462 761 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 PCDHGA4Q9Y5G9 962 aa17.02■□□□□ 0.32
VPS9D1-203ENST00000563798 TRBV23OR9-2A0A075B6M9 112 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 AGRPO00253 132 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 PSTPIP1O43586 416 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 SLC25A14O95258 325 aaPredicted RBP17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 ACP5P13686 325 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 ZNF8P17098 575 aaPredicted RBP17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 COMTP21964 271 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 PTPN3P26045 913 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 RAB15P59190 212 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 ADGRG6Q86SQ4 1221 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 EXD3Q8N9H8 876 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 NKD1Q969G9 470 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 GLYATL1Q969I3 302 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 AHCYL2Q96HN2 611 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 ANP32EQ9BTT0 268 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 SPATA16Q9BXB7 569 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 SPRY4Q9C004 299 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 TSPY26PQ9H489 355 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 SHOC2Q9UQ13 582 aa17.01■□□□□ 0.31
VPS9D1-203ENST00000563798 A0A0A6YYK5 440 aaPredicted RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 LOC285095A0A1B0GVY8 99 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 LILRA5A6NI73 299 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 AKR1B15C9JRZ8 316 aaPredicted RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 MT-CYBP00156 380 aaPredicted RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 EPOP01588 193 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 BPIP17213 487 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 XRCC1P18887 633 aaPredicted RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 WT1P19544 449 aaPredicted RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 MPSTP25325 297 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 UBE2IP63279 158 aaKnown RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 WASHC5Q12768 1159 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 VASH2Q86V25 355 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 ZNF761Q86XN6 746 aaPredicted RBP17■□□□□ 0.31
VPS9D1-203ENST00000563798 PHYKPLQ8IUZ5 450 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 ZSCAN1Q8NBB4 408 aa17■□□□□ 0.31
VPS9D1-203ENST00000563798 SPATA22Q8NHS9 363 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms