RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CNOT10Q9H9A5 744 aaKnown RBP5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 UPF2Q9HAU5 1272 aaKnown RBP5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 TUFT1Q9NNX1 390 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 FAM212BQ9NTI7 297 aaPredicted RBP5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 FBXO28Q9NVF7 368 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 NCKIPSDQ9NZQ3 722 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 ANKMY1Q9P2S6 941 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 KLQ9UEF7 1012 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 MTUS1Q9ULD2 1270 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 SHOC2Q9UQ13 582 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 TRAF3IP3Q9Y228 551 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 TAF6LQ9Y6J9 622 aa5.23□□□□□ -1.57
VPS35P1-201ENST00000563400 SALL3Q9BXA9 1300 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SALL1Q9NSC2 1324 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ANKRD36CQ5JPF3 1778 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ARFGEF2Q9Y6D5 1785 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 LOC100509620A0A075B734 347 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ELOVL7A1L3X0 281 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NPIPB13A6NJU9 1138 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 LRRC53A6NM62 1247 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NPIPB5A8MRT5 1133 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CXorf49A8MYA2 514 aaPredicted RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NPIPB4C9JG80 1138 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CCDC188H7C350 402 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 MTX2O75431 263 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 TRUB2O95900 331 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CHEK2O96017 543 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 FGBP02675 491 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 HLA-DOAP06340 250 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SRPRAP08240 638 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ACTN1P12814 892 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 GYPEP15421 78 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CTPS1P17812 591 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CDH3P22223 829 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SP100P23497 879 aaPredicted RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NR2F2P24468 414 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 FMO4P31512 558 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 UQCRC1P31930 480 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 EPHX2P34913 555 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 GDNFP39905 211 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 PTGER3P43115 390 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 OR1G1P47890 313 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 GATMP50440 423 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CLCNKBP51801 687 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ARSFP54793 590 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 YWHAZP63104 245 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 KLF10Q13118 480 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 BFSP2Q13515 415 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 DPYSQ14117 519 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ARHGEF6Q15052 776 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ACOX1Q15067 660 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 DLG2Q15700 870 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 PKN1Q16512 942 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SLC18A3Q16572 532 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CYP2A13Q16696 494 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CR1LQ2VPA4 569 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SFMBT2Q5VUG0 894 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 FKBP1CQ5VVH2 108 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 FAM91A1Q658Y4 838 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 PLA2G4FQ68DD2 849 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 C17orf99Q6UX52 265 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 TRIM72Q6ZMU5 477 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CLEC14AQ86T13 490 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ZCCHC7Q8N3Z6 543 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 METTL25Q8N6Q8 603 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 STPG3Q8N7X2 389 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SLC4A11Q8NBS3 891 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CCNYQ8ND76 341 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NSUN7Q8NE18 718 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 MCUQ8NE86 351 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NLGN4YQ8NFZ3 816 aaPredicted RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 OR52K1Q8NGK4 314 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 OR2T34Q8NGX1 318 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 WASF1Q92558 559 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 LPGAT1Q92604 370 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 TMEM176AQ96HP8 235 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 HES6Q96HZ4 224 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ZNF668Q96K58 619 aaPredicted RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 FAM84BQ96KN1 310 aaPredicted RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CNOT6LQ96LI5 555 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 FAM210AQ96ND0 272 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 AGAP3Q96P47 875 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 WDR83Q9BRX9 315 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 KATNBL1Q9H079 304 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SIK2Q9H0K1 926 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 SERHL2Q9H4I8 314 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 RIBC2Q9H4K1 309 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 PDZD7Q9H5P4 517 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 GCM1Q9NP62 436 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ARL8BQ9NVJ2 186 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 DNAJC17Q9NVM6 304 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 ABI3Q9P2A4 366 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 POLLQ9UGP5 575 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 GRID1Q9ULK0 1009 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CTNND2Q9UQB3 1225 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 CHTOPQ9Y3Y2 248 aaKnown RBP5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 HCFC2Q9Y5Z7 792 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 NRXN2Q9P2S2 1712 aa5.22□□□□□ -1.57
VPS35P1-201ENST00000563400 RPAP1Q9BWH6 1393 aaPredicted RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms