RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 TRIM43Q96BQ3 446 aaPredicted RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 C12orf43Q96C57 262 aaKnown RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 DHRS9Q9BPW9 319 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 TSSK1BQ9BXA7 367 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CACNG6Q9BXT2 260 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MANSC1Q9H8J5 431 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ERVMER34-1Q9H9K5 563 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 PLEKHA2Q9HB19 425 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 NECTIN3Q9NQS3 549 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ACSS2Q9NR19 701 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 TBC1D14Q9P2M4 693 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 DSEQ9UL01 958 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 INTS6Q9UL03 887 aaKnown RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CDK5RAP2Q96SN8 1893 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 C7orf72A4D263 438 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ZSCAN5BA6NJL1 495 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 A6NL46 340 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 SYCE1LA8MT33 242 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 PSMD11O00231 422 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 VWA5AO00534 786 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 SLC22A1O15245 554 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MYO1DO94832 1006 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 TMEM63AO94886 807 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 KRT6AP02538 564 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 KRT6BP04259 564 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ALOX5P09917 674 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CALM1P0DP23 149 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CALM2P0DP24 149 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CALM3P0DP25 149 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CTRB1P17538 263 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 EGR1P18146 543 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 GCAP28676 217 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MC5RP33032 325 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CPOXP36551 454 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 BTDP43251 543 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 GALCP54803 685 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ID3Q02535 119 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 KDSRQ06136 332 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CTRB2Q6GPI1 263 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 AADACL2Q6P093 401 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ATG14Q6ZNE5 492 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CYP4V2Q6ZWL3 525 aaPredicted RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 USP51Q70EK9 711 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ALYREFQ86V81 257 aaKnown RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 TXNRD3Q86VQ6 643 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 KSR1Q8IVT5 923 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 POGLUT1Q8NBL1 392 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MINDY2Q8NBR6 621 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MAFAQ8NHW3 353 aaPredicted RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 PEX13Q92968 403 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MR1Q95460 341 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CFAP57Q96MR6 1250 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 TSG101Q99816 390 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 PIMREGQ9BSJ6 248 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MECRQ9BV79 373 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 DCLK3Q9C098 648 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 RNF32Q9H0A6 362 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MROH8Q9H579 483 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MID1IP1Q9NPA3 183 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 SEPT10Q9P0V9 454 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 CACNG4Q9UBN1 327 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ATP11BQ9Y2G3 1177 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 MYH11P35749 1972 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 LRRC37AA6NMS7 1700 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 NAV1Q8NEY1 1877 aa6.72□□□□□ -1.33
TSPAN3-209ENST00000560715 ARHGAP42A6NI28 874 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 MIF4GDA9UHW6 222 aaKnown RBP6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 J3KTA2 159 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 J3QRK9 145 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 SGK1O00141 431 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 TNFSF14O43557 240 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 ALX3O95076 343 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 KLHL2O95198 593 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 BMP10O95393 424 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 H6PDO95479 791 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 IL1BP01584 269 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 MYL2P10916 166 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 NCF1P14598 390 aaPredicted RBP6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 NAGAP17050 411 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 MALP21145 153 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 FPR1P21462 350 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 PRDX5P30044 214 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 HOXA7P31268 230 aaPredicted RBP6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 PITPNBP48739 271 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 GSTO1P78417 241 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 TFAP4Q01664 338 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 CDK18Q07002 472 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 ITGADQ13349 1161 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 TRIP13Q15645 432 aaPredicted RBP6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 GPR19Q15760 415 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 ZBED5Q49AG3 693 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 CEP55Q53EZ4 464 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 UBXN11Q5T124 520 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 SCARA3Q6AZY7 606 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 TUBA3EQ6PEY2 450 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 GPR141Q7Z602 305 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 KBTBD6Q86V97 674 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 CILP2Q8IUL8 1156 aa6.71□□□□□ -1.33
TSPAN3-209ENST00000560715 HACE1Q8IYU2 909 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms