RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RORBQ92753 470 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 GJA10Q969M2 543 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 HDAC10Q969S8 669 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 SLITRK1Q96PX8 696 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 STRA6Q9BX79 667 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 SHARPINQ9H0F6 387 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 RANBP3Q9H6Z4 567 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 SPAG4Q9NPE6 437 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 IL17RBQ9NRM6 502 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 KLHL20Q9Y2M5 609 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 HSPB11Q9Y547 144 aa13.75□□□□□ -0.21
SHMT2-226ENST00000556825 BAZ2AQ9UIF9 1905 aaKnown RBP13.75□□□□□ -0.21
SHMT2-226ENST00000556825 TFECO14948 347 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SYN3O14994 580 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CDK1P06493 297 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 C2P06681 752 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SUPT20HL2P0C7V6 817 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 IL7RP16871 459 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 NAPAP54920 295 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 GTDC1Q4AE62 458 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 TAF2Q6P1X5 1199 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 ZNF782Q6ZMW2 699 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 FAM35AQ86V20 835 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SLC47A2Q86VL8 602 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 OR8H3Q8N146 312 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 ZNF366Q8N895 744 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 ZNF557Q8N988 423 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 OR6P1Q8NGX9 317 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SLC35B2Q8TB61 432 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SDR42E1Q8WUS8 393 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 GAL3ST1Q99999 423 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SH2D3AQ9BRG2 576 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CCDC32Q9BV29 185 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 RUSC1Q9BVN2 902 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CINPQ9BW66 212 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 C6orf62Q9GZU0 229 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 NXF2Q9GZY0 626 aaKnown RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 BFARQ9NZS9 450 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 ZNF639Q9UID6 485 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 TRHDEQ9UKU6 1024 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SPATA2Q9UM82 520 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CDK5RAP2Q96SN8 1893 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 PNMA8CA0A1B0GUJ8 204 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 MICAL2O94851 1124 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 LDOC1O95751 146 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CCR10P46092 362 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SLC12A3P55017 1021 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 HSD17B7P56937 341 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 DAB2P98082 770 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 EMX1Q04741 257 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 GRIK2Q13002 908 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CBLBQ13191 982 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 IMPG1Q17R60 797 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SLC35G1Q2M3R5 365 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 PDSS1Q5T2R2 415 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 ALG1LQ6GMV1 187 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 LRFN4Q6PJG9 635 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 C8orf59Q8N0T1 100 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 STON2Q8WXE9 905 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SIPA1Q96FS4 1042 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SERPINB11Q96P15 392 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 OR2A14Q96R47 310 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 CNPY3Q9BT09 278 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SLC19A3Q9BZV2 496 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 LRRC4Q9HBW1 653 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 SMYD2Q9NRG4 433 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 KCNH7Q9NS40 1196 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 TRMT13Q9NUP7 481 aaKnown RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 INTS10Q9NVR2 710 aaKnown RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 RAB20Q9NX57 234 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 DCDC2Q9UHG0 476 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 PNMA8BQ9ULN7 279 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-226ENST00000556825 ZNRF3Q9ULT6 936 aa13.74□□□□□ -0.21
SHMT2-226ENST00000556825 C17orf113A0A1B0GUU1 675 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 ATP6AP2A0A1C7CYW4 349 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 GNB5O14775 395 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 LRCH4O75427 683 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 CPB1P15086 417 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 ETV6P41212 452 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 RFX2P48378 723 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 PER3P56645 1201 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 CDH17Q12864 832 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 BAATQ14032 418 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 GRM4Q14833 912 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 ZNF169Q14929 603 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 ZMAT1Q5H9K5 638 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 FAM160B1Q5W0V3 765 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 CCDC24Q8N4L8 307 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 CHDHQ8NE62 594 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 RNF34Q969K3 372 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 ELMO2Q96JJ3 720 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 SIGLEC10Q96LC7 697 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 DCLRE1CQ96SD1 692 aaKnown RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 PELOQ9BRX2 385 aaKnown RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 DCSTAMPQ9H295 470 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 TRIM45Q9H8W5 580 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 DPP3Q9NY33 737 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 TSR3Q9UJK0 312 aaKnown RBP13.73□□□□□ -0.21
SHMT2-226ENST00000556825 KCNH4Q9UQ05 1017 aa13.73□□□□□ -0.21
SHMT2-226ENST00000556825 KCNU1A8MYU2 1149 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms