RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CREG1	O75629	220 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	NDUFA10	O95299	355 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	CLDN7	O95471	211 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	RECK	O95980	971 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	C9	P02748	559 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	FTL	P02792	175 aa	Predicted RBP	12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	AMD1	P17707	334 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	CES1	P23141	567 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	PCK1	P35558	622 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	CAPRIN2	Q6IMN6	1127 aa	Known RBP	12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	LRRC49	Q8IUZ0	686 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	PHYKPL	Q8IUZ5	450 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	GALNT11	Q8NCW6	608 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	TGM7	Q96PF1	710 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	CSPG4P5	Q96PW8	444 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	ERGIC2	Q96RQ1	377 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	TWSG1	Q9GZX9	223 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	UCK1	Q9HA47	277 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	LIMA1	Q9UHB6	759 aa	Known RBP	12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	PADI1	Q9ULC6	663 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	CHKB	Q9Y259	395 aa		12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	MN1	Q10571	1320 aa	Predicted RBP	12.51	□□□□□ -0.41
SHMT2-223	ENST00000556689	SPEN	Q96T58	3664 aa	Known RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	LRRK2	Q5S007	2527 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	CDC14C	A4D256	554 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	LILRA5	A6NI73	299 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	KIAA0754	O94854	1291 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	UBXN7	O94888	489 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	TYRP1	P17643	537 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	XRCC1	P18887	633 aa	Predicted RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	CDK11B	P21127	795 aa	Known RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	GNLY	P22749	145 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	IL1R2	P27930	398 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	SERPINB6	P35237	376 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	UQCRFS1	P47985	274 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	SPINT3	P49223	89 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	SEPHS1	P49903	392 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	CLCNKA	P51800	687 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	PMS2	P54278	862 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	GFER	P55789	205 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	UBE2I	P63279	158 aa	Known RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	SH3BP2	P78314	561 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	SMTNL2	Q2TAL5	461 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	TMEM135	Q86UB9	458 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	APLF	Q8IW19	511 aa	Predicted RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	CPT1C	Q8TCG5	803 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	HSPH1	Q92598	858 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	RNF31	Q96EP0	1072 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	ELMO2	Q96JJ3	720 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	PLEKHG4B	Q96PX9	1271 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	WDR24	Q96S15	920 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	SYT11	Q9BT88	431 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	POLR1E	Q9GZS1	481 aa	Known RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	CARD9	Q9H257	536 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	FAM83D	Q9H4H8	585 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF768	Q9H5H4	540 aa	Known RBP	12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	OGFR	Q9NZT2	677 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	PCDHGA6	Q9Y5G7	932 aa		12.5	□□□□□ -0.41
SHMT2-223	ENST00000556689	USP9Y	O00507	2555 aa	Predicted RBP	12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	FADS2P1	A8MWK0	482 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	NUAK1	O60285	661 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	SPAG6	O75602	509 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	RASSF9	O75901	435 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	PRL	P01236	227 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	VIP	P01282	170 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	MT-ND3	P03897	115 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	RARA	P10276	462 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	GZMA	P12544	262 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	GARS	P41250	739 aa	Known RBP	12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	HENMT1	Q5T8I9	393 aa	Known RBP	12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	TMEM26	Q6ZUK4	368 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	TRIM48	Q8IWZ4	208 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	AOPEP	Q8N6M6	819 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	CCHCR1	Q8TD31	782 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	SSC4D	Q8WTU2	575 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	MRPL47	Q9HD33	250 aa	Known RBP	12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	KLC4	Q9NSK0	619 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	ATXN10	Q9UBB4	475 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	LNPEP	Q9UIQ6	1025 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	SLC30A1	Q9Y6M5	507 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	SCIN	Q9Y6U3	715 aa		12.49	□□□□□ -0.41
SHMT2-223	ENST00000556689	C1orf232	A0A0U1RR37	186 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	RGSL1	A5PLK6	1076 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	GOLGA6L3	A6NEY3	463 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	C21orf140	B9A014	251 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	PDGFA	P04085	211 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	FGF5	P12034	268 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	ZNF8	P17098	575 aa	Predicted RBP	12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	CA4	P22748	312 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	CASP14	P31944	242 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	SLC19A1	P41440	591 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	LEPR	P48357	1165 aa	Known RBP	12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	RPL26	P61254	145 aa	Known RBP	12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	DSC2	Q02487	901 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	SEMA5A	Q13591	1074 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	DNASE1L3	Q13609	305 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	IHH	Q14623	411 aa		12.48	□□□□□ -0.41
SHMT2-223	ENST00000556689	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms