RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ISCA2Q86U28 154 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 SFRP1Q8N474 314 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MINDY1Q8N5J2 469 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PDZD8Q8NEN9 1154 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 FRS2Q8WU20 508 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 NT5C3BQ969T7 300 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ESAMQ96AP7 390 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ROPN1LQ96C74 230 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 HDAC11Q96DB2 347 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 HBEGFQ99075 208 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CTRCQ99895 268 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PSD2Q9BQI7 771 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 FICDQ9BVA6 458 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ING2Q9H160 280 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MARCH4Q9P2E8 410 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 FBXO5Q9UKT4 447 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TMA7Q9Y2S6 64 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 KCTD3Q9Y597 815 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PCDHGA3Q9Y5H0 932 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PLXNA1Q9UIW2 1896 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PHIPQ8WWQ0 1821 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CASTOR2A6NHX0 329 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ZBBXA8MT70 800 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 FAM47E-STBD1D6RA91 191 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 UBXN8O00124 270 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 KPNA4O00629 521 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ANGPT2O15123 496 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PFDN6O15212 129 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TSPAN1O60635 241 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CLASP2O75122 1294 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 GJB3O75712 270 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TOMM70O94826 608 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PARNO95453 639 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 C1RP00736 705 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ALBP02768 609 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PRSS56P0CW18 603 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MZF1P28698 734 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TAF6P49848 677 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 SEPHS1P49903 392 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 RAB15P59190 212 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TIAL1Q01085 375 aaKnown RBP eCLIP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 DGCR6Q14129 220 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MAPRE2Q15555 327 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MAPRE1Q15691 268 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 SMUG1Q53HV7 270 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 BROXQ5VW32 411 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 WSCD1Q658N2 575 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ENPP6Q6UWR7 440 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 USP43Q70EL4 1123 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 SPATC1Q76KD6 591 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 LINC00523Q86TU6 105 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CNTN4Q8IWV2 1026 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 RIMKLAQ8IXN7 391 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 GPC2Q8N158 579 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 DTWD1Q8N5C7 304 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 C17orf50Q8WW18 174 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CAPSLQ8WWF8 208 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CLIP3Q96DZ5 547 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF560Q96MR9 790 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ACOX2Q99424 681 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 KCTD14Q9BQ13 255 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TUBA1CQ9BQE3 449 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 RHOBTB2Q9BYZ6 727 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 NDEL1Q9GZM8 345 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC90BQ9GZT6 254 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TP63Q9H3D4 680 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 PLEKHA5Q9HAU0 1116 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 VTA1Q9NP79 307 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MRPL40Q9NQ50 206 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 POLG2Q9UHN1 485 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 ENPP5Q9UJA9 477 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TSR3Q9UJK0 312 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 MID2Q9UJV3 735 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 IKZF3Q9UKT9 509 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 AGO1Q9UL18 857 aaKnown RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CRYL1Q9Y2S2 319 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 NDUFAF1Q9Y375 327 aa4.83□□□□□ -1.64
LIMA1-214ENST00000552783 CAB39Q9Y376 341 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-214ENST00000552783 TSC2P49815 1807 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PDHXO00330 501 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 NOL3O60936 208 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MLYCDO95822 493 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 LDLRP01130 860 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 USP17L7P0C7H9 530 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 POLD2P49005 469 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 NPY2RP49146 381 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ARSDP51689 593 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MTPNP58546 118 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ADAM17P78536 824 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 EMX1Q04741 257 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TRIM32Q13049 653 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CAMK2BQ13554 666 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 NFYCQ13952 458 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 OR4D1Q15615 310 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ATAD3BQ5T9A4 648 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SLC27A1Q6PCB7 646 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 BLOC1S3Q6QNY0 202 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PLEKHG7Q6ZR37 379 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 OSTM1Q86WC4 334 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 COLGALT2Q8IYK4 626 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms