RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PLAC1Q9HBJ0 212 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 NEK6Q9HC98 313 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 FAM105AQ9NUU6 356 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 INTS10Q9NVR2 710 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TMEM45AQ9NWC5 275 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ABCD2Q9UBJ2 740 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 UBA2Q9UBT2 640 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 MARCOQ9UEW3 520 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 ANKRD6Q9Y2G4 727 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 PCDHGA7Q9Y5G6 932 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 C1orf232A0A0U1RR37 186 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 A0A1B0GTW7 788 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TCAF2A6NFQ2 919 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TRPC5OSA6NMA1 111 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 LACTBL1A8MY62 500 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 POLR1CO15160 346 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 PHGDHO43175 533 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 PRKCBP05771 671 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 KITP10721 976 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ZNF182P17025 639 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 NCF2P19878 526 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 WEE1P30291 646 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CD52P31358 61 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 DDOSTP39656 456 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CSRP3P50461 194 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 PSME3P61289 254 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 DMPKQ09013 629 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 IL18R1Q13478 541 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SEMA5AQ13591 1074 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SQLEQ14534 574 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CDK10Q15131 360 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HIST2H2ACQ16777 129 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 INAVAQ3KP66 663 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 GRTP1Q5TC63 336 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 C2orf16Q68DN1 1984 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SLC6A19Q695T7 634 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 DARS2Q6PI48 645 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 CRTC1Q6UUV9 634 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CLEC14AQ86T13 490 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ZBTB8OSQ8IWT0 167 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 FAM20CQ8IXL6 584 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SPARTQ8N0X7 666 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 PELI3Q8N2H9 469 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 DHRSXQ8N5I4 330 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ANKRD52Q8NB46 1076 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 RNF149Q8NC42 400 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TOR1AIP2Q8NFQ8 470 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 DBF4BQ8NFT6 615 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 GOT1L1Q8NHS2 421 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 SNX19Q92543 992 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 VPS33AQ96AX1 596 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CEP19Q96LK0 163 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CEP295NLQ96MC4 621 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ASB2Q96Q27 587 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 RAD9AQ99638 391 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 OSMRQ99650 979 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SLC29A1Q99808 456 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CDT1Q9H211 546 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 MTIF3Q9H2K0 278 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TP63Q9H3D4 680 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 SIAEQ9HAT2 523 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SPAG4Q9NPE6 437 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HPS4Q9NQG7 708 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SMPD3Q9NY59 655 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 POU2F3Q9UKI9 436 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 NUP50Q9UKX7 468 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 MAGEB16A2A368 324 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TTC24A2A3L6 582 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 OR5K3A6NET4 321 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 J3QRK9 145 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CYB561D2O14569 222 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 DFNA5O60443 496 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 NDUFS2O75306 463 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 GPC4O75487 556 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 UPK1BO75841 260 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 NAGAP17050 411 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 KDELR1P24390 212 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ACVR2AP27037 513 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 UGT2B10P36537 528 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ETV6P41212 452 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CASP3P42574 277 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 GAD2Q05329 585 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ZNF252P-AS1Q0IIN9 211 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TARDBPQ13148 414 aaKnown RBP eCLIP5.24□□□□□ -1.57
USP28-213ENST00000544967 MMRN1Q13201 1228 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 RAB33AQ14088 237 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 LRP8Q14114 963 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 KIZQ2M2Z5 673 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SETMARQ53H47 684 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 MTX3Q5HYI7 312 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SEL1L3Q68CR1 1132 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 XAF1Q6GPH4 301 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SLFN12LQ6IEE8 588 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 ZNF544Q6NX49 715 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TMEM184AQ6ZMB5 413 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 UNC5AQ6ZN44 842 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HACE1Q8IYU2 909 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms