RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	BEND5	Q7L4P6	421 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	BLOC1S5	Q8TDH9	187 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	CNDP2	Q96KP4	475 aa	Known RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	ING2	Q9H160	280 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	NANOG	Q9H9S0	305 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	AIG1	Q9NVV5	245 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	ZNF639	Q9UID6	485 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	PCNT	O95613	3336 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	TYW5	A2RUC4	315 aa	Known RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	FUOM	A2VDF0	154 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838		H0YAE9	185 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	SLC22A3	O75751	556 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	C1R	P00736	705 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	HAPLN1	P10915	354 aa	Predicted RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	HRH2	P25021	359 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	ZFP36L2	P47974	494 aa	Known RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	ANKS6	Q68DC2	871 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	MRNIP	Q6NTE8	343 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	METTL23	Q86XA0	190 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	LEMD2	Q8NC56	503 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	GTF3C2	Q8WUA4	911 aa	Predicted RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	ACBD6	Q9BR61	282 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	C1orf50	Q9BV19	199 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	INTS7	Q9NVH2	962 aa	Known RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	PAIP2B	Q9ULR5	123 aa	Known RBP	12.85	□□□□□ -0.35
DDX11-223	ENST00000542838	ARL5A	Q9Y689	179 aa		12.85	□□□□□ -0.35
DDX11-223	ENST00000542838		K7EPI3	171 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	BCL10	O95999	233 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	MBL2	P11226	248 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	BRCC3	P46736	316 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	POLR2J	P52435	117 aa	Known RBP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	TMBIM6	P55061	237 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	MLLT6	P55198	1093 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	RELA	Q04206	551 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	TIGD2	Q4W5G0	525 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	GPR142	Q7Z601	462 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	LRRTM3	Q86VH5	581 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	PROSER1	Q86XN7	944 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SFRP1	Q8N474	314 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	TMEM199	Q8N511	208 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	PFDN4	Q9NQP4	134 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	FAM105A	Q9NUU6	356 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SELENON	Q9NZV5	590 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	TTC3	P53804	2025 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	CCDC162P	A2VCL2	907 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	WASH4P	A8MWX3	477 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SNX2	O60749	519 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	ATXN1L	P0C7T5	689 aa	Known RBP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	HTR1E	P28566	365 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	PRDX3	P30048	256 aa	Known RBP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SHMT2	P34897	504 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SUOX	P51687	545 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	OR4D2	P58180	307 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	NR1D2	Q14995	579 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	PIK3R6	Q5UE93	754 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	BROX	Q5VW32	411 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	GLYAT	Q6IB77	296 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SLC15A4	Q8N697	577 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	BPIFB6	Q8NFQ5	453 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	OR13C4	Q8NGS5	318 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	STAG3L4	Q8TBR4	150 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	HASPIN	Q8TF76	798 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	RSPH1	Q8WYR4	309 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SNX19	Q92543	992 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	PSMG2	Q969U7	264 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	NSMCE2	Q96MF7	247 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	GLT1D1	Q96MS3	346 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	AARSD1	Q9BTE6	412 aa	Known RBP	12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	SUN2	Q9UH99	717 aa		12.84	□□□□□ -0.35
DDX11-223	ENST00000542838	UBA6	A0AVT1	1052 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	NCF1B	A6NI72	391 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	NCF1C	A8MVU1	366 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838		H0Y858	1186 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	KERA	O60938	352 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	FUCA1	P04066	466 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	PRR35	P0CG20	571 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	NCF1	P14598	390 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	HOXB8	P17481	243 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	GNA12	Q03113	381 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	YWHAH	Q04917	246 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	SCD5	Q86SK9	330 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	ITIH5	Q86UX2	942 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	RALGPS2	Q86X27	583 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	CLEC4F	Q8N1N0	589 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	UMODL1-AS1	Q8N2C9	162 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	PDZD8	Q8NEN9	1154 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	NPLOC4	Q8TAT6	608 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	BPIFB1	Q8TDL5	484 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	KIAA1191	Q96A73	305 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	NRBF2	Q96F24	287 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	CCDC68	Q9H2F9	335 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	ADNP	Q9H2P0	1102 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	POPDC3	Q9HBV1	291 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	TLR9	Q9NR96	1032 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	GMIP	Q9P107	970 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	GNPTG	Q9UJJ9	305 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	PCDHGA11	Q9Y5H2	935 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	CORIN	Q9Y5Q5	1042 aa		12.83	□□□□□ -0.36
DDX11-223	ENST00000542838	C1orf232	A0A0U1RR37	186 aa		12.83	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms