RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SCN4AP35499 1836 aa9.42□□□□□ -0.9
CLIP1-214ENST00000540539 C17orf113A0A1B0GUU1 675 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 KBTBD13C9JR72 458 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 GATCO43716 136 aaKnown RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TPST1O60507 370 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TMEM63AO94886 807 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 C2P06681 752 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TGM2P21980 687 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 MAPK4P31152 587 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TGFBR1P36897 503 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 FMO5P49326 533 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 KNOP1Q1ED39 458 aaKnown RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 MROH9Q5TGP6 573 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 FKBP1CQ5VVH2 108 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 HTR3DQ70Z44 454 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 HEATR3Q7Z4Q2 680 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PCDH20Q8N6Y1 951 aaKnown RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 ZMIZ2Q8NF64 920 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 OR10T2Q8NGX3 314 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 UTP15Q8TED0 518 aaKnown RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 SLC22A17Q8WUG5 538 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 NCLNQ969V3 563 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 SGTBQ96EQ0 304 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 APBA2Q99767 749 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 ASPSCR1Q9BZE9 553 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 ING2Q9H160 280 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 ASB7Q9H672 318 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PCDH9Q9HC56 1237 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 GPRC5CQ9NQ84 441 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 HPF1Q9NWY4 346 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 HACL1Q9UJ83 578 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 USP22Q9UPT9 525 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TCRBV7S3A2A0A539 114 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PRORSD1PA6NEY8 169 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 CXorf49A8MYA2 514 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 H3BQ06 376 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 SLC16A3O15427 465 aaKnown RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TADA2AO75478 443 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 C1QAP02745 245 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TSHRP16473 764 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 CD58P19256 250 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 KCNA5P22460 613 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 HLA-FP30511 346 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 ELK3P41970 407 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 RPS9P46781 194 aaKnown RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PSMD8P48556 350 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 MEOX2P50222 304 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PSME3P61289 254 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 FAXCQ5TGI0 409 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 IRAK1BP1Q5VVH5 260 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 RNF180Q86T96 592 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PPIL6Q8IXY8 311 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TCTE3Q8IZS6 198 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TAB3Q8N5C8 712 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 NAT8LQ8N9F0 302 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 OR8H1Q8NGG4 311 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 OR52N1Q8NH53 320 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 MAGEB10Q96LZ2 347 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 ZHX3Q9H4I2 956 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 C8orf33Q9H7E9 229 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PNMA8BQ9ULN7 279 aaPredicted RBP9.41□□□□□ -0.9
CLIP1-214ENST00000540539 TBC1D24Q9ULP9 559 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 PCDHGA2Q9Y5H1 932 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 CDY2AQ9Y6F7 541 aa9.41□□□□□ -0.9
CLIP1-214ENST00000540539 BTN3A3O00478 584 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TRIM24O15164 1050 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 FZD6O60353 706 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 POP4O95707 220 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 FCER2P06734 321 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PCMT1P22061 227 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 FXR2P51116 673 aaKnown RBP eCLIP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 AIF1P55008 147 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 SPATS1Q496A3 300 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TBCELQ5QJ74 424 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 STK32CQ86UX6 486 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 P2RY8Q86VZ1 359 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 DDIASQ8IXT1 998 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ADGRG2Q8IZP9 1017 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 OR4D10Q8NGI6 311 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 MCOLN3Q8TDD5 553 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PTERQ96BW5 349 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 C6orf62Q9GZU0 229 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 NUAK2Q9H093 628 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TMEM245Q9H330 911 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PCIF1Q9H4Z3 704 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ZCCHC4Q9H5U6 513 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TBC1D22BQ9NU19 505 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ING3Q9NXR8 418 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 EHD3Q9NZN3 535 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 EMCNQ9ULC0 261 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 AURKCQ9UQB9 309 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TMX2Q9Y320 296 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PCDHGB6Q9Y5F9 930 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ASTN1O14525 1302 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 WDR90Q96KV7 1748 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PIPSLA2A3N6 862 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 HEATR9A2RTY3 570 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 CCDC182A6NF36 153 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TCAF2A6NFQ2 919 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 DDTLA6NHG4 134 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms