RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 CAPNS1P04632 268 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 NCF1P14598 390 aaPredicted RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 IST1P53990 364 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 SH3BP2P78314 561 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 NR1D2Q14995 579 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 USP41Q3LFD5 358 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 UNC50Q53HI1 259 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 ZNF678Q5SXM1 525 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 NADSYN1Q6IA69 706 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 ZNF354CQ86Y25 554 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 PDZD8Q8NEN9 1154 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 OR13C4Q8NGS5 318 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 OR2T34Q8NGX1 318 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 OR2T3Q8NH03 318 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 TBC1D15Q8TC07 691 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 SMIM14Q96QK8 99 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 DGCR6LQ9BY27 220 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 MFSD1Q9H3U5 465 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 SP110Q9HB58 689 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 TRAF6Q9Y4K3 522 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 MKI67P46013 3256 aaKnown RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 MANSC4A6NHS7 340 aaPredicted RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 SLC7A4O43246 635 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 PAPSS2O95340 614 aaPredicted RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 PARNO95453 639 aaKnown RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 C8BP07358 591 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 IMPDH1P20839 514 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 OR1G1P47890 313 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 FLT3LGP49771 235 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 GALNT3Q14435 633 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 RPS6KA2Q15349 733 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 IMPG1Q17R60 797 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 ZBED5Q49AG3 693 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 BORAQ6PGQ7 559 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 RSPO2Q6UXX9 243 aaPredicted RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 LARP4Q71RC2 724 aaKnown RBP eCLIP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 RALGPS2Q86X27 583 aaPredicted RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 DDHD1Q8NEL9 900 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 EFHD1Q9BUP0 239 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 ANKRD60Q9BZ19 345 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 AKTIPQ9H8T0 292 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 FANCEQ9HB96 536 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 MAP10Q9P2G4 905 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 HCSTQ9UBK5 93 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 SUCOQ9UBS9 1254 aaKnown RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 AASSQ9UDR5 926 aa12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 WARS2Q9UGM6 360 aaKnown RBP12.5□□□□□ -0.41
SFSWAP-208ENST00000539506 AGRPO00253 132 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 INPPL1O15357 1258 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 SEPT4O43236 478 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 XYLBO75191 536 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 VNN2O95498 520 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 GOT2P00505 430 aaKnown RBP12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 CAPN3P20807 821 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 DIO3P55073 304 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 PHEXP78562 749 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 AAK1Q2M2I8 961 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 PYCR3Q53H96 274 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 TRAF7Q6Q0C0 670 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 PRR23BQ6ZRT6 265 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 RAVER1Q8IY67 606 aaKnown RBP12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 CALML6Q8TD86 181 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 PPP1R2P1Q96PQ5 205 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 SEMA3CQ99985 751 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 CD300AQ9UGN4 299 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 IKZF3Q9UKT9 509 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 PLXNA3P51805 1871 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 VWA8A3KMH1 1905 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 A0A0D9SEW6 157 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 TCRBV3S1A0A5B6 114 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 ZBBXA8MT70 800 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 CD1DP15813 335 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 OR4D1Q15615 310 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 ADRM1Q16186 407 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 VARS2Q5ST30 1063 aaKnown RBP12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 DCDC5Q6ZRR9 648 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 COX4I2Q96KJ9 171 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 C8orf48Q96LL4 319 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 GPATCH1Q9BRR8 931 aaKnown RBP12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 IL37Q9NZH6 218 aa12.49□□□□□ -0.41
SFSWAP-208ENST00000539506 TSPAN3O60637 253 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 COQ9O75208 318 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 RBP1P09455 135 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 MTHFD2P13995 350 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 IL7RP16871 459 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 ARL1P40616 181 aaPredicted RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 MAGEA8P43361 318 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 EIF2B2P49770 351 aaKnown RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 NKX3-2P78367 333 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 SERINC3Q13530 473 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 POLD3Q15054 466 aaPredicted RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 PPP4R4Q6NUP7 873 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 SLC15A3Q8IY34 581 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 HS3ST5Q8IZT8 346 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 CFAP52Q8N1V2 620 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 PSD4Q8NDX1 1056 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 BLOC1S5Q8TDH9 187 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 FATE1Q969F0 183 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 TEX37Q96LM6 180 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms