RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TRMT13Q9NUP7 481 aaKnown RBP12.37□□□□□ -0.43
USP3-203ENST00000538686 CCDC167Q9P0B6 97 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 STON1Q9Y6Q2 735 aa12.37□□□□□ -0.43
USP3-203ENST00000538686 TCRBV5S2A0A599 114 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 BCLAF3A2AJT9 711 aaKnown RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 NFIBO00712 420 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 INPP4BO15327 924 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 MSH4O15457 936 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 KCNN4O15554 427 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ZNF623O75123 536 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 TULP3O75386 442 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 PRSS23O95084 383 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 PGAM1P18669 254 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 PSMA2P25787 234 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CPT1AP50416 773 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CXCR4P61073 352 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ERVK-21P61565 698 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 OGDHQ02218 1023 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CD47Q08722 323 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 LAPTM5Q13571 262 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 PRPSAP1Q14558 356 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 TSC22D1Q15714 1073 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 TAB1Q15750 504 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ARMCX4Q5H9R4 360 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 OTUD3Q5T2D3 398 aaPredicted RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 FAM35AQ86V20 835 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 RASGRP3Q8IV61 690 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 TMEM151BQ8IW70 566 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 SLC44A5Q8NCS7 719 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ZMIZ2Q8NF64 920 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 NSUN6Q8TEA1 469 aaKnown RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 FCGR1BQ92637 280 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 MFSD14AQ96MC6 490 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 FYTTD1Q96QD9 318 aaKnown RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 OR2A14Q96R47 310 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ACE2Q9BYF1 805 aaPredicted RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 LRRC4Q9HBW1 653 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ITM2CQ9NQX7 267 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 WDR70Q9NW82 654 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 SCN3BQ9NY72 215 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 PRELID3BQ9Y3B1 194 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CLRN2A0PK11 232 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 PTGES3LE9PB15 166 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 H3BQ06 376 aaPredicted RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 LRCH4O75427 683 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CALCAP01258 141 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 JUNDP17535 347 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CHRM3P20309 590 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 MSH3P20585 1137 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 SREBF1P36956 1147 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 TPMTP51580 245 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 RAB25P57735 213 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 GTF2BQ00403 316 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 ZNF534Q76KX8 674 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 GPAT4Q86UL3 456 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CCDC24Q8N4L8 307 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 AADATQ8N5Z0 425 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 GLB1L3Q8NCI6 653 aaPredicted RBP12.36□□□□□ -0.43
USP3-203ENST00000538686 SETD9Q8NE22 299 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 BPIFB1Q8TDL5 484 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 FBLIM1Q8WUP2 373 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 UFD1Q92890 307 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 AP2M1Q96CW1 435 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 MFSD3Q96ES6 412 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 UROC1Q96N76 676 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 WACQ9BTA9 647 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 IFT46Q9NQC8 304 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 FNIP2Q9P278 1114 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 TBC1D24Q9ULP9 559 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 SNX6Q9UNH7 406 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 MAPRE3Q9UPY8 281 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 CACNG2Q9Y698 323 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 COMMD10Q9Y6G5 202 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 HSPE1-MOB4S4R3N1 261 aa12.36□□□□□ -0.43
USP3-203ENST00000538686 A0A096LPK6 155 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 CCDC182A6NF36 153 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L15C9J2P7 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L13C9JLJ4 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L11C9JVI0 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L18D6R9N7 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L22D6RA61 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L17D6RBQ6 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L19D6RCP7 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L20D6RJB6 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 EEF2KO00418 725 aaKnown RBP12.35□□□□□ -0.43
USP3-203ENST00000538686 AP3D1O14617 1153 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 PPM1BO75688 479 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 CD36P16671 472 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 RAB3AP20336 220 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 KELP23276 732 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 RPL9P32969 192 aaKnown RBP12.35□□□□□ -0.43
USP3-203ENST00000538686 GSTO1P78417 241 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 PIGFQ07326 219 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L24Q0WX57 530 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 COQ5Q5HYK3 327 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 USP17L6PQ6QN14 398 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 TBPL2Q6SJ96 375 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 DBX2Q6ZNG2 339 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 FBXO33Q7Z6M2 555 aa12.35□□□□□ -0.43
USP3-203ENST00000538686 PROSER1Q86XN7 944 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms